Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP28Q96RU2 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP28Q96RU2 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP28Q96RU2 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.47■□□□□ 0.55
USP28Q96RU2 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
USP28Q96RU2 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP28Q96RU2 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.47■□□□□ 0.55
USP28Q96RU2 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP28Q96RU2 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP28Q96RU2 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
USP28Q96RU2 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.46■□□□□ 0.55
USP28Q96RU2 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC18.46■□□□□ 0.55
USP28Q96RU2 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.46■□□□□ 0.55
USP28Q96RU2 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
USP28Q96RU2 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
USP28Q96RU2 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.46■□□□□ 0.55
USP28Q96RU2 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.46■□□□□ 0.55
USP28Q96RU2 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
USP28Q96RU2 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
USP28Q96RU2 RNA5SP416-201ENST00000516838 111 ntBASIC18.46■□□□□ 0.55
USP28Q96RU2 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.46■□□□□ 0.55
USP28Q96RU2 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.46■□□□□ 0.55
USP28Q96RU2 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.46■□□□□ 0.55
USP28Q96RU2 AC061975.2-201ENST00000581722 295 ntBASIC18.46■□□□□ 0.55
USP28Q96RU2 AC120114.3-201ENST00000611923 658 ntBASIC18.46■□□□□ 0.55
USP28Q96RU2 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.46■□□□□ 0.55
USP28Q96RU2 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
USP28Q96RU2 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.46■□□□□ 0.55
USP28Q96RU2 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.46■□□□□ 0.55
USP28Q96RU2 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP28Q96RU2 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
USP28Q96RU2 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
USP28Q96RU2 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
USP28Q96RU2 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.45■□□□□ 0.54
USP28Q96RU2 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
USP28Q96RU2 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 AC018892.3-201ENST00000623986 2499 ntBASIC18.45■□□□□ 0.54
USP28Q96RU2 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.45■□□□□ 0.54
USP28Q96RU2 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
USP28Q96RU2 AC092127.1-201ENST00000567093 3455 ntBASIC18.45■□□□□ 0.54
USP28Q96RU2 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
USP28Q96RU2 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.45■□□□□ 0.54
USP28Q96RU2 MED15P5-201ENST00000423150 992 ntBASIC18.45■□□□□ 0.54
USP28Q96RU2 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.45■□□□□ 0.54
USP28Q96RU2 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.45■□□□□ 0.54
USP28Q96RU2 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.45■□□□□ 0.54
USP28Q96RU2 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.45■□□□□ 0.54
USP28Q96RU2 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.45■□□□□ 0.54
USP28Q96RU2 AC027601.4-201ENST00000611259 610 ntBASIC18.45■□□□□ 0.54
USP28Q96RU2 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.45■□□□□ 0.54
USP28Q96RU2 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.45■□□□□ 0.54
USP28Q96RU2 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP28Q96RU2 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.45■□□□□ 0.54
USP28Q96RU2 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
USP28Q96RU2 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.44■□□□□ 0.54
USP28Q96RU2 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.44■□□□□ 0.54
USP28Q96RU2 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.44■□□□□ 0.54
USP28Q96RU2 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.44■□□□□ 0.54
USP28Q96RU2 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.44■□□□□ 0.54
USP28Q96RU2 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP28Q96RU2 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP28Q96RU2 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP28Q96RU2 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
USP28Q96RU2 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP28Q96RU2 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.44■□□□□ 0.54
USP28Q96RU2 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.44■□□□□ 0.54
USP28Q96RU2 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
USP28Q96RU2 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms