Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC22.44■■□□□ 1.18
USP47Q96K76 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC22.44■■□□□ 1.18
USP47Q96K76 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
USP47Q96K76 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC22.44■■□□□ 1.18
USP47Q96K76 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC22.44■■□□□ 1.18
USP47Q96K76 RNA5SP421-201ENST00000516864 134 ntBASIC22.44■■□□□ 1.18
USP47Q96K76 STOM-203ENST00000538954 1257 ntTSL 5 BASIC22.44■■□□□ 1.18
USP47Q96K76 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC22.44■■□□□ 1.18
USP47Q96K76 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC22.44■■□□□ 1.18
USP47Q96K76 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC22.44■■□□□ 1.18
USP47Q96K76 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC22.44■■□□□ 1.18
USP47Q96K76 Z97205.2-201ENST00000564697 1639 ntBASIC22.44■■□□□ 1.18
USP47Q96K76 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC22.44■■□□□ 1.18
USP47Q96K76 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC22.44■■□□□ 1.18
USP47Q96K76 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC22.44■■□□□ 1.18
USP47Q96K76 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC22.44■■□□□ 1.18
USP47Q96K76 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC22.44■■□□□ 1.18
USP47Q96K76 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC22.44■■□□□ 1.18
USP47Q96K76 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP47Q96K76 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC22.43■■□□□ 1.18
USP47Q96K76 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
USP47Q96K76 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC22.43■■□□□ 1.18
USP47Q96K76 PHKG1P2-201ENST00000457537 863 ntBASIC22.43■■□□□ 1.18
USP47Q96K76 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC22.43■■□□□ 1.18
USP47Q96K76 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC22.43■■□□□ 1.18
USP47Q96K76 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 ARL16-202ENST00000570561 768 ntTSL 2 BASIC22.43■■□□□ 1.18
USP47Q96K76 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
USP47Q96K76 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
USP47Q96K76 FLII-221ENST00000578558 2377 ntTSL 5 BASIC22.43■■□□□ 1.18
USP47Q96K76 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC22.43■■□□□ 1.18
USP47Q96K76 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC22.42■■□□□ 1.18
USP47Q96K76 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
USP47Q96K76 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC22.42■■□□□ 1.18
USP47Q96K76 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC22.42■■□□□ 1.18
USP47Q96K76 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
USP47Q96K76 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
USP47Q96K76 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC22.42■■□□□ 1.18
USP47Q96K76 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 TARDBPP1-201ENST00000442013 1203 ntBASIC22.42■■□□□ 1.18
USP47Q96K76 INGX-202ENST00000489074 768 ntBASIC22.42■■□□□ 1.18
USP47Q96K76 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC22.42■■□□□ 1.18
USP47Q96K76 RAB35-202ENST00000534951 939 ntTSL 2 BASIC22.42■■□□□ 1.18
USP47Q96K76 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC22.42■■□□□ 1.18
USP47Q96K76 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC22.42■■□□□ 1.18
USP47Q96K76 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC22.42■■□□□ 1.18
USP47Q96K76 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC22.42■■□□□ 1.18
USP47Q96K76 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC22.42■■□□□ 1.18
USP47Q96K76 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
USP47Q96K76 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC22.42■■□□□ 1.18
USP47Q96K76 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC22.42■■□□□ 1.18
USP47Q96K76 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
USP47Q96K76 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
USP47Q96K76 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC22.42■■□□□ 1.18
USP47Q96K76 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC22.42■■□□□ 1.18
USP47Q96K76 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
USP47Q96K76 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC22.41■■□□□ 1.18
USP47Q96K76 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
USP47Q96K76 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
USP47Q96K76 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
USP47Q96K76 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
USP47Q96K76 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC22.41■■□□□ 1.18
USP47Q96K76 AC114501.2-201ENST00000439631 535 ntBASIC22.41■■□□□ 1.18
USP47Q96K76 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC22.41■■□□□ 1.18
USP47Q96K76 AC104794.3-201ENST00000566840 1248 ntBASIC22.41■■□□□ 1.18
USP47Q96K76 PRR29-204ENST00000577953 565 ntTSL 4 BASIC22.41■■□□□ 1.18
USP47Q96K76 AC074044.1-201ENST00000609673 707 ntBASIC22.41■■□□□ 1.18
USP47Q96K76 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC22.41■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms