Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.38
LRCH3Q96II8 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
LRCH3Q96II8 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.39■□□□□ 0.38
LRCH3Q96II8 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
LRCH3Q96II8 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 BAATP1-201ENST00000412284 1225 ntBASIC17.39■□□□□ 0.37
LRCH3Q96II8 SOCS2P1-201ENST00000417727 557 ntBASIC17.39■□□□□ 0.37
LRCH3Q96II8 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 KLK3-207ENST00000595952 969 ntTSL 3 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.39■□□□□ 0.37
LRCH3Q96II8 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRCH3Q96II8 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LRCH3Q96II8 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRCH3Q96II8 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.38■□□□□ 0.37
LRCH3Q96II8 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LRCH3Q96II8 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.38■□□□□ 0.37
LRCH3Q96II8 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.38■□□□□ 0.37
LRCH3Q96II8 RN7SL720P-201ENST00000488178 304 ntBASIC17.38■□□□□ 0.37
LRCH3Q96II8 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 MIR4741-201ENST00000579822 90 ntBASIC17.38■□□□□ 0.37
LRCH3Q96II8 NAT9-222ENST00000583476 583 ntTSL 3 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 RN7SL555P-201ENST00000584742 339 ntBASIC17.38■□□□□ 0.37
LRCH3Q96II8 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 AC018635.2-201ENST00000608625 364 ntBASIC17.38■□□□□ 0.37
LRCH3Q96II8 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRCH3Q96II8 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRCH3Q96II8 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.38■□□□□ 0.37
LRCH3Q96II8 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRCH3Q96II8 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRCH3Q96II8 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRCH3Q96II8 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRCH3Q96II8 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRCH3Q96II8 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRCH3Q96II8 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LRCH3Q96II8 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRCH3Q96II8 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRCH3Q96II8 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LRCH3Q96II8 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
LRCH3Q96II8 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LRCH3Q96II8 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LRCH3Q96II8 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRCH3Q96II8 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRCH3Q96II8 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
LRCH3Q96II8 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRCH3Q96II8 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LRCH3Q96II8 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC17.37■□□□□ 0.37
LRCH3Q96II8 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.37■□□□□ 0.37
LRCH3Q96II8 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC17.37■□□□□ 0.37
LRCH3Q96II8 IQSEC3P1-201ENST00000538799 536 ntBASIC17.37■□□□□ 0.37
LRCH3Q96II8 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.37■□□□□ 0.37
LRCH3Q96II8 AC023310.1-201ENST00000554836 735 ntBASIC17.37■□□□□ 0.37
LRCH3Q96II8 AC104982.3-201ENST00000581995 514 ntBASIC17.37■□□□□ 0.37
LRCH3Q96II8 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRCH3Q96II8 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC17.37■□□□□ 0.37
LRCH3Q96II8 PAX6-247ENST00000638965 979 ntTSL 5 BASIC17.37■□□□□ 0.37
LRCH3Q96II8 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
LRCH3Q96II8 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms