Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.03■□□□□ -0
BEST3Q8N1M1 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.03■□□□□ -0
BEST3Q8N1M1 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.03■□□□□ -0
BEST3Q8N1M1 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.03■□□□□ -0
BEST3Q8N1M1 AC008761.3-201ENST00000624803 892 ntBASIC15.03■□□□□ -0
BEST3Q8N1M1 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 AC078925.2-201ENST00000624013 1973 ntBASIC15.03■□□□□ -0
BEST3Q8N1M1 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.03■□□□□ -0
BEST3Q8N1M1 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
BEST3Q8N1M1 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
BEST3Q8N1M1 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.02■□□□□ -0
BEST3Q8N1M1 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
BEST3Q8N1M1 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.02■□□□□ -0
BEST3Q8N1M1 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.02■□□□□ -0
BEST3Q8N1M1 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.02■□□□□ -0
BEST3Q8N1M1 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.02■□□□□ -0
BEST3Q8N1M1 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.02■□□□□ -0
BEST3Q8N1M1 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.02■□□□□ -0
BEST3Q8N1M1 FAM207CP-201ENST00000443486 507 ntBASIC15.02■□□□□ -0
BEST3Q8N1M1 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.02■□□□□ -0
BEST3Q8N1M1 AC024267.1-201ENST00000582320 895 ntBASIC15.02■□□□□ -0
BEST3Q8N1M1 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.02■□□□□ -0
BEST3Q8N1M1 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.02■□□□□ -0
BEST3Q8N1M1 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.02■□□□□ -0
BEST3Q8N1M1 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
BEST3Q8N1M1 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
BEST3Q8N1M1 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
BEST3Q8N1M1 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.02□□□□□ -0.01
BEST3Q8N1M1 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
BEST3Q8N1M1 AC068587.6-202ENST00000641839 5619 ntBASIC15.02□□□□□ -0.01
BEST3Q8N1M1 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.02□□□□□ -0.01
BEST3Q8N1M1 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
BEST3Q8N1M1 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.02□□□□□ -0.01
BEST3Q8N1M1 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
BEST3Q8N1M1 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
BEST3Q8N1M1 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
BEST3Q8N1M1 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.02□□□□□ -0.01
BEST3Q8N1M1 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 AL513477.1-201ENST00000602865 2407 ntBASIC15.01□□□□□ -0.01
BEST3Q8N1M1 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 RPL37AP1-201ENST00000412502 279 ntBASIC15.01□□□□□ -0.01
BEST3Q8N1M1 MRPS18AP1-201ENST00000414458 589 ntBASIC15.01□□□□□ -0.01
BEST3Q8N1M1 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 TEX28P1-201ENST00000613479 1221 ntBASIC15.01□□□□□ -0.01
BEST3Q8N1M1 TEX28P2-201ENST00000617764 1221 ntBASIC15.01□□□□□ -0.01
BEST3Q8N1M1 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
BEST3Q8N1M1 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms