Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 HLA-H-201ENST00000383620 1096 ntBASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 MIR648-201ENST00000385046 94 ntBASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 AL627223.1-201ENST00000416693 442 ntBASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 CNN2P11-201ENST00000429351 262 ntBASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 AL596442.2-201ENST00000610240 980 ntBASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SYNE3Q6ZMZ3 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 FAM220BP-201ENST00000377689 816 ntBASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 RPS8P6-201ENST00000426177 609 ntBASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 AL691403.2-201ENST00000618460 490 ntBASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
SYNE3Q6ZMZ3 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms