Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HIST1H1AQ02539 TNRC18P2-201ENST00000417666 2714 ntBASIC12.46□□□□□ -0.41
HIST1H1AQ02539 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 SNX33P1-201ENST00000592116 1762 ntBASIC12.46□□□□□ -0.41
HIST1H1AQ02539 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 AC129492.6-201ENST00000611383 1305 ntBASIC12.46□□□□□ -0.41
HIST1H1AQ02539 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 AC138035.3-201ENST00000622706 2791 ntBASIC12.46□□□□□ -0.41
HIST1H1AQ02539 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 AC107918.2-201ENST00000530817 355 ntBASIC12.46□□□□□ -0.41
HIST1H1AQ02539 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 AC105339.3-201ENST00000560043 636 ntBASIC12.46□□□□□ -0.41
HIST1H1AQ02539 AL356488.2-201ENST00000602755 427 ntBASIC12.46□□□□□ -0.41
HIST1H1AQ02539 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 BSG-214ENST00000614867 960 ntTSL 3 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 AC008735.5-201ENST00000623544 497 ntBASIC12.46□□□□□ -0.41
HIST1H1AQ02539 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
HIST1H1AQ02539 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HIST1H1AQ02539 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 SLC22A20-204ENST00000530038 1673 ntBASIC12.45□□□□□ -0.42
HIST1H1AQ02539 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 RPS2P28-201ENST00000314255 741 ntBASIC12.45□□□□□ -0.42
HIST1H1AQ02539 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 AC073621.1-201ENST00000392730 636 ntBASIC12.45□□□□□ -0.42
HIST1H1AQ02539 HCG4-201ENST00000418983 998 ntBASIC12.45□□□□□ -0.42
HIST1H1AQ02539 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 KRT18P27-201ENST00000427733 1299 ntBASIC12.45□□□□□ -0.42
HIST1H1AQ02539 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 EMBP1-201ENST00000458200 901 ntBASIC12.45□□□□□ -0.42
HIST1H1AQ02539 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 UNC93B7-201ENST00000509439 705 ntBASIC12.45□□□□□ -0.42
HIST1H1AQ02539 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 RPS29-206ENST00000557111 488 ntTSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 AC008667.4-201ENST00000607370 168 ntBASIC12.45□□□□□ -0.42
HIST1H1AQ02539 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 TP73-AS1-207ENST00000624167 988 ntBASIC12.45□□□□□ -0.42
HIST1H1AQ02539 PGM5P2-202ENST00000637225 1043 ntBASIC12.45□□□□□ -0.42
HIST1H1AQ02539 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 OR2I1P-210ENST00000642037 4691 ntBASIC12.45□□□□□ -0.42
HIST1H1AQ02539 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HIST1H1AQ02539 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms