Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NEK3P51956 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.7■□□□□ 0.26
NEK3P51956 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NEK3P51956 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
NEK3P51956 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.7■□□□□ 0.26
NEK3P51956 AC027307.2-201ENST00000591252 911 ntBASIC16.7■□□□□ 0.26
NEK3P51956 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.7■□□□□ 0.26
NEK3P51956 AC106028.4-201ENST00000614509 607 ntBASIC16.7■□□□□ 0.26
NEK3P51956 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.7■□□□□ 0.26
NEK3P51956 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.7■□□□□ 0.26
NEK3P51956 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NEK3P51956 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NEK3P51956 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.7■□□□□ 0.26
NEK3P51956 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NEK3P51956 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
NEK3P51956 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.7■□□□□ 0.26
NEK3P51956 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NEK3P51956 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NEK3P51956 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NEK3P51956 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.7■□□□□ 0.26
NEK3P51956 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.69■□□□□ 0.26
NEK3P51956 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
NEK3P51956 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.69■□□□□ 0.26
NEK3P51956 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
NEK3P51956 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
NEK3P51956 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.69■□□□□ 0.26
NEK3P51956 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.69■□□□□ 0.26
NEK3P51956 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
NEK3P51956 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.69■□□□□ 0.26
NEK3P51956 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.69■□□□□ 0.26
NEK3P51956 FAM58DP-201ENST00000428076 619 ntBASIC16.69■□□□□ 0.26
NEK3P51956 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.69■□□□□ 0.26
NEK3P51956 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.69■□□□□ 0.26
NEK3P51956 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.69■□□□□ 0.26
NEK3P51956 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.69■□□□□ 0.26
NEK3P51956 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.69■□□□□ 0.26
NEK3P51956 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
NEK3P51956 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.69■□□□□ 0.26
NEK3P51956 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
NEK3P51956 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 KRT8P39-201ENST00000396270 1433 ntBASIC16.69■□□□□ 0.26
NEK3P51956 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NEK3P51956 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.68■□□□□ 0.26
NEK3P51956 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.68■□□□□ 0.26
NEK3P51956 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
NEK3P51956 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.68■□□□□ 0.26
NEK3P51956 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
NEK3P51956 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
NEK3P51956 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
NEK3P51956 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
NEK3P51956 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.68■□□□□ 0.26
NEK3P51956 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.68■□□□□ 0.26
NEK3P51956 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.68■□□□□ 0.26
NEK3P51956 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.68■□□□□ 0.26
NEK3P51956 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
NEK3P51956 RBPMS2P1-201ENST00000437762 623 ntBASIC16.68■□□□□ 0.26
NEK3P51956 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.68■□□□□ 0.26
NEK3P51956 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.68■□□□□ 0.26
NEK3P51956 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.68■□□□□ 0.26
NEK3P51956 AC084121.4-201ENST00000641598 221 ntBASIC16.68■□□□□ 0.26
NEK3P51956 AF228730.8-201ENST00000642140 221 ntBASIC16.68■□□□□ 0.26
NEK3P51956 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.68■□□□□ 0.26
NEK3P51956 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.68■□□□□ 0.26
NEK3P51956 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.68■□□□□ 0.26
NEK3P51956 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.68■□□□□ 0.26
NEK3P51956 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.68■□□□□ 0.26
NEK3P51956 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 AL031731.1-201ENST00000642131 2094 ntBASIC16.68■□□□□ 0.26
NEK3P51956 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms