Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PTPN9P43378 AL162727.3-201ENST00000635661 2787 ntBASIC16.75■□□□□ 0.27
PTPN9P43378 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
PTPN9P43378 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
PTPN9P43378 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.75■□□□□ 0.27
PTPN9P43378 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.75■□□□□ 0.27
PTPN9P43378 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.75■□□□□ 0.27
PTPN9P43378 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.75■□□□□ 0.27
PTPN9P43378 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.75■□□□□ 0.27
PTPN9P43378 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.75■□□□□ 0.27
PTPN9P43378 AC109322.1-201ENST00000524499 1264 ntBASIC16.75■□□□□ 0.27
PTPN9P43378 AC069262.1-201ENST00000539058 672 ntBASIC16.75■□□□□ 0.27
PTPN9P43378 AL133215.2-201ENST00000609242 977 ntBASIC16.75■□□□□ 0.27
PTPN9P43378 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PTPN9P43378 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.75■□□□□ 0.27
PTPN9P43378 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.75■□□□□ 0.27
PTPN9P43378 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN9P43378 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
PTPN9P43378 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.74■□□□□ 0.27
PTPN9P43378 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
PTPN9P43378 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PTPN9P43378 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PTPN9P43378 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 KRT8P37-201ENST00000451609 1420 ntBASIC16.74■□□□□ 0.27
PTPN9P43378 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.74■□□□□ 0.27
PTPN9P43378 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 CROCCP1-201ENST00000426910 5675 ntBASIC16.74■□□□□ 0.27
PTPN9P43378 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
PTPN9P43378 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.74■□□□□ 0.27
PTPN9P43378 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.74■□□□□ 0.27
PTPN9P43378 MIR4453-201ENST00000584019 89 ntBASIC16.74■□□□□ 0.27
PTPN9P43378 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.74■□□□□ 0.27
PTPN9P43378 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.74■□□□□ 0.27
PTPN9P43378 REXO1L1P-202ENST00000608646 1974 ntBASIC16.74■□□□□ 0.27
PTPN9P43378 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PTPN9P43378 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.74■□□□□ 0.27
PTPN9P43378 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN9P43378 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.74■□□□□ 0.27
PTPN9P43378 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PTPN9P43378 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.73■□□□□ 0.27
PTPN9P43378 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PTPN9P43378 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PTPN9P43378 SPDYE17-201ENST00000412399 783 ntBASIC16.73■□□□□ 0.27
PTPN9P43378 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.73■□□□□ 0.27
PTPN9P43378 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.73■□□□□ 0.27
PTPN9P43378 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.73■□□□□ 0.27
PTPN9P43378 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.73■□□□□ 0.27
PTPN9P43378 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 RN7SL828P-201ENST00000607615 303 ntBASIC16.73■□□□□ 0.27
PTPN9P43378 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.73■□□□□ 0.27
PTPN9P43378 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.73■□□□□ 0.27
PTPN9P43378 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PTPN9P43378 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms