Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.16■□□□□ 0.18
XRCC1P18887 FAM58DP-201ENST00000428076 619 ntBASIC16.16■□□□□ 0.18
XRCC1P18887 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.16■□□□□ 0.18
XRCC1P18887 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.16■□□□□ 0.18
XRCC1P18887 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.16■□□□□ 0.18
XRCC1P18887 AC109322.1-201ENST00000524499 1264 ntBASIC16.16■□□□□ 0.18
XRCC1P18887 RFPL4AP1-201ENST00000530883 850 ntBASIC16.16■□□□□ 0.18
XRCC1P18887 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.16■□□□□ 0.18
XRCC1P18887 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.16■□□□□ 0.18
XRCC1P18887 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.16■□□□□ 0.18
XRCC1P18887 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
XRCC1P18887 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.15■□□□□ 0.18
XRCC1P18887 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
XRCC1P18887 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
XRCC1P18887 UXT-AS1-201ENST00000590504 1525 ntBASIC16.15■□□□□ 0.18
XRCC1P18887 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.15■□□□□ 0.18
XRCC1P18887 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
XRCC1P18887 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.15■□□□□ 0.18
XRCC1P18887 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.15■□□□□ 0.18
XRCC1P18887 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.15■□□□□ 0.18
XRCC1P18887 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.15■□□□□ 0.18
XRCC1P18887 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 AL512356.2-201ENST00000546955 174 ntBASIC16.15■□□□□ 0.18
XRCC1P18887 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.15■□□□□ 0.18
XRCC1P18887 AC093028.1-201ENST00000622998 982 ntBASIC16.15■□□□□ 0.18
XRCC1P18887 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.15■□□□□ 0.18
XRCC1P18887 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
XRCC1P18887 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.15■□□□□ 0.18
XRCC1P18887 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
XRCC1P18887 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
XRCC1P18887 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
XRCC1P18887 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.15■□□□□ 0.18
XRCC1P18887 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
XRCC1P18887 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
XRCC1P18887 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
XRCC1P18887 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
XRCC1P18887 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
XRCC1P18887 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
XRCC1P18887 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
XRCC1P18887 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.14■□□□□ 0.17
XRCC1P18887 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
XRCC1P18887 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
XRCC1P18887 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
XRCC1P18887 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
XRCC1P18887 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.14■□□□□ 0.17
XRCC1P18887 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
XRCC1P18887 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
XRCC1P18887 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
XRCC1P18887 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.14■□□□□ 0.17
XRCC1P18887 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
XRCC1P18887 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.14■□□□□ 0.17
XRCC1P18887 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
XRCC1P18887 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.14■□□□□ 0.17
XRCC1P18887 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
XRCC1P18887 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
XRCC1P18887 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
XRCC1P18887 AP000842.3-202ENST00000569238 1080 ntBASIC16.14■□□□□ 0.17
XRCC1P18887 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.14■□□□□ 0.17
XRCC1P18887 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.14■□□□□ 0.17
XRCC1P18887 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
XRCC1P18887 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
XRCC1P18887 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms