Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.08□□□□□ -0.32
HMGB3O15347 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC13.08□□□□□ -0.32
HMGB3O15347 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
HMGB3O15347 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
HMGB3O15347 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC13.08□□□□□ -0.32
HMGB3O15347 GXYLT1P3-201ENST00000453058 1193 ntBASIC13.08□□□□□ -0.32
HMGB3O15347 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC13.08□□□□□ -0.32
HMGB3O15347 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
HMGB3O15347 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC13.08□□□□□ -0.32
HMGB3O15347 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC13.08□□□□□ -0.32
HMGB3O15347 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
HMGB3O15347 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
HMGB3O15347 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.08□□□□□ -0.32
HMGB3O15347 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC13.08□□□□□ -0.32
HMGB3O15347 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC13.08□□□□□ -0.32
HMGB3O15347 FER1L5-207ENST00000641731 6294 ntAPPRIS ALT2 BASIC13.08□□□□□ -0.32
HMGB3O15347 BTBD9-201ENST00000314100 8486 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
HMGB3O15347 AC139749.1-202ENST00000617529 3139 ntBASIC13.08□□□□□ -0.32
HMGB3O15347 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC13.08□□□□□ -0.32
HMGB3O15347 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 AC023157.3-201ENST00000619086 2088 ntBASIC13.08□□□□□ -0.32
HMGB3O15347 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC13.08□□□□□ -0.32
HMGB3O15347 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.07□□□□□ -0.32
HMGB3O15347 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC13.07□□□□□ -0.32
HMGB3O15347 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
HMGB3O15347 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.07□□□□□ -0.32
HMGB3O15347 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC13.07□□□□□ -0.32
HMGB3O15347 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.07□□□□□ -0.32
HMGB3O15347 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.07□□□□□ -0.32
HMGB3O15347 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
HMGB3O15347 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
HMGB3O15347 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 STARP1-201ENST00000397973 869 ntBASIC13.07□□□□□ -0.32
HMGB3O15347 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC13.07□□□□□ -0.32
HMGB3O15347 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC13.07□□□□□ -0.32
HMGB3O15347 VENTXP5-201ENST00000523979 775 ntBASIC13.07□□□□□ -0.32
HMGB3O15347 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC13.07□□□□□ -0.32
HMGB3O15347 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC13.07□□□□□ -0.32
HMGB3O15347 AL138831.2-201ENST00000606564 490 ntBASIC13.07□□□□□ -0.32
HMGB3O15347 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 HNRNPRP1-201ENST00000453465 1695 ntBASIC13.07□□□□□ -0.32
HMGB3O15347 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
HMGB3O15347 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
HMGB3O15347 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.07□□□□□ -0.32
HMGB3O15347 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC13.07□□□□□ -0.32
HMGB3O15347 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC13.07□□□□□ -0.32
HMGB3O15347 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
HMGB3O15347 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 AC007686.3-201ENST00000619017 3487 ntBASIC13.07□□□□□ -0.32
HMGB3O15347 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HMGB3O15347 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
HMGB3O15347 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.06□□□□□ -0.32
HMGB3O15347 AC106881.1-201ENST00000605849 3329 ntBASIC13.06□□□□□ -0.32
HMGB3O15347 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 KRT8P49-201ENST00000604166 1432 ntBASIC13.06□□□□□ -0.32
HMGB3O15347 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.06□□□□□ -0.32
HMGB3O15347 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 AC136621.1-201ENST00000624017 2304 ntBASIC13.06□□□□□ -0.32
HMGB3O15347 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC13.06□□□□□ -0.32
HMGB3O15347 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.06□□□□□ -0.32
HMGB3O15347 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms