Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SSU72Q9NP77 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 FOSL1P1-201ENST00000511041 816 ntBASIC16.05■□□□□ 0.16
SSU72Q9NP77 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 AC021087.4-201ENST00000563761 564 ntBASIC16.05■□□□□ 0.16
SSU72Q9NP77 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 AL645728.2-201ENST00000641974 660 ntBASIC16.05■□□□□ 0.16
SSU72Q9NP77 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 GRK6P1-201ENST00000400595 1711 ntBASIC16.05■□□□□ 0.16
SSU72Q9NP77 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSU72Q9NP77 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.05■□□□□ 0.16
SSU72Q9NP77 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 OR7E47P-204ENST00000575924 449 ntBASIC16.04■□□□□ 0.16
SSU72Q9NP77 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.04■□□□□ 0.16
SSU72Q9NP77 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSU72Q9NP77 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 AC007191.1-201ENST00000623179 2995 ntBASIC16.03■□□□□ 0.16
SSU72Q9NP77 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 AC026748.1-201ENST00000624349 3251 ntBASIC16.03■□□□□ 0.16
SSU72Q9NP77 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 AC232323.1-201ENST00000540724 2099 ntBASIC16.03■□□□□ 0.16
SSU72Q9NP77 REXO1L5P-201ENST00000622260 2098 ntBASIC16.03■□□□□ 0.16
SSU72Q9NP77 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms