Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 AC079328.2-201ENST00000561241 3354 ntBASIC15.56■□□□□ 0.08
VMP1Q96GC9 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 AP006288.1-201ENST00000446065 395 ntBASIC15.56■□□□□ 0.08
VMP1Q96GC9 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.56■□□□□ 0.08
VMP1Q96GC9 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.56■□□□□ 0.08
VMP1Q96GC9 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.56■□□□□ 0.08
VMP1Q96GC9 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VMP1Q96GC9 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 AC092364.2-201ENST00000596710 2692 ntBASIC15.55■□□□□ 0.08
VMP1Q96GC9 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 FAM86C2P-203ENST00000528684 1004 ntBASIC15.55■□□□□ 0.08
VMP1Q96GC9 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.55■□□□□ 0.08
VMP1Q96GC9 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 AC099522.2-201ENST00000607001 744 ntBASIC15.55■□□□□ 0.08
VMP1Q96GC9 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms