Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 HNRNPUP1-201ENST00000554987 333 ntBASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 AC005695.3-201ENST00000614522 232 ntBASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 GRN-222ENST00000639447 1314 ntTSL 2 BASIC21.55■■□□□ 1.04
KRT28Q7Z3Y7 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 MIR663B-201ENST00000408361 115 ntBASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 AC016629.1-201ENST00000596579 586 ntBASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 AC093813.1-201ENST00000605066 256 ntBASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 HARS-202ENST00000415192 1401 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT28Q7Z3Y7 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 AP001582.1-201ENST00000525856 295 ntBASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 ACR-203ENST00000529621 708 ntTSL 5 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 KC6-205ENST00000599934 556 ntTSL 4 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT28Q7Z3Y7 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 BANP-227ENST00000626016 2144 ntTSL 2 BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms