Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 AC007967.4-201ENST00000614700 386 ntBASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 SPDYE12P-201ENST00000618416 771 ntBASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC144BQ3MJ40 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
CCDC144BQ3MJ40 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.77■□□□□ 0.59
CCDC144BQ3MJ40 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC144BQ3MJ40 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.77■□□□□ 0.59
CCDC144BQ3MJ40 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.77■□□□□ 0.59
CCDC144BQ3MJ40 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 FOXO1B-201ENST00000504678 1527 ntBASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 AL138828.2-201ENST00000615812 383 ntBASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC144BQ3MJ40 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms