Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
GABPAQ06546 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
GABPAQ06546 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
GABPAQ06546 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.85■□□□□ 0.61
GABPAQ06546 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.85■□□□□ 0.61
GABPAQ06546 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
GABPAQ06546 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
GABPAQ06546 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.85■□□□□ 0.61
GABPAQ06546 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
GABPAQ06546 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
GABPAQ06546 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.84■□□□□ 0.61
GABPAQ06546 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.84■□□□□ 0.61
GABPAQ06546 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.84■□□□□ 0.61
GABPAQ06546 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.84■□□□□ 0.61
GABPAQ06546 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
GABPAQ06546 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.84■□□□□ 0.61
GABPAQ06546 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.84■□□□□ 0.61
GABPAQ06546 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.84■□□□□ 0.61
GABPAQ06546 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.84■□□□□ 0.61
GABPAQ06546 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.84■□□□□ 0.61
GABPAQ06546 ELK1P1-201ENST00000485699 580 ntBASIC18.84■□□□□ 0.61
GABPAQ06546 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.84■□□□□ 0.61
GABPAQ06546 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.84■□□□□ 0.61
GABPAQ06546 RARRES2P5-201ENST00000564013 466 ntBASIC18.84■□□□□ 0.61
GABPAQ06546 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
GABPAQ06546 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.84■□□□□ 0.61
GABPAQ06546 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.84■□□□□ 0.61
GABPAQ06546 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
GABPAQ06546 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
GABPAQ06546 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
GABPAQ06546 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.83■□□□□ 0.61
GABPAQ06546 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
GABPAQ06546 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.83■□□□□ 0.61
GABPAQ06546 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
GABPAQ06546 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.83■□□□□ 0.61
GABPAQ06546 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
GABPAQ06546 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
GABPAQ06546 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
GABPAQ06546 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.83■□□□□ 0.61
GABPAQ06546 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.83■□□□□ 0.61
GABPAQ06546 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
GABPAQ06546 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
GABPAQ06546 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
GABPAQ06546 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
GABPAQ06546 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
GABPAQ06546 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC18.83■□□□□ 0.6
GABPAQ06546 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.83■□□□□ 0.6
GABPAQ06546 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.83■□□□□ 0.6
GABPAQ06546 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.83■□□□□ 0.6
GABPAQ06546 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.83■□□□□ 0.6
GABPAQ06546 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.83■□□□□ 0.6
GABPAQ06546 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
GABPAQ06546 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.83■□□□□ 0.6
GABPAQ06546 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.83■□□□□ 0.6
GABPAQ06546 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
GABPAQ06546 CTBP2P3-201ENST00000585629 1255 ntBASIC18.83■□□□□ 0.6
GABPAQ06546 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
GABPAQ06546 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
GABPAQ06546 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.83■□□□□ 0.6
GABPAQ06546 AC093726.1-201ENST00000608064 963 ntBASIC18.83■□□□□ 0.6
GABPAQ06546 IGHV3-72-202ENST00000621503 303 ntBASIC18.83■□□□□ 0.6
GABPAQ06546 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
GABPAQ06546 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
GABPAQ06546 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
GABPAQ06546 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
GABPAQ06546 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.83■□□□□ 0.6
GABPAQ06546 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
GABPAQ06546 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
GABPAQ06546 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
GABPAQ06546 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.82■□□□□ 0.6
GABPAQ06546 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.82■□□□□ 0.6
GABPAQ06546 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
GABPAQ06546 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
GABPAQ06546 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
GABPAQ06546 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
GABPAQ06546 AC136604.1-201ENST00000418535 575 ntBASIC18.82■□□□□ 0.6
GABPAQ06546 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.82■□□□□ 0.6
GABPAQ06546 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.82■□□□□ 0.6
GABPAQ06546 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.82■□□□□ 0.6
GABPAQ06546 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
GABPAQ06546 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.82■□□□□ 0.6
GABPAQ06546 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
GABPAQ06546 TIMM17BP1-201ENST00000545713 516 ntBASIC18.82■□□□□ 0.6
GABPAQ06546 AC123567.1-201ENST00000548294 1261 ntBASIC18.82■□□□□ 0.6
GABPAQ06546 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.82■□□□□ 0.6
GABPAQ06546 HNRNPUP1-201ENST00000554987 333 ntBASIC18.82■□□□□ 0.6
GABPAQ06546 MIR8072-201ENST00000614241 80 ntBASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms