Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 AC016027.1-202ENST00000607927 1699 ntBASIC13.1□□□□□ -0.31
CX3CL1P78423 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CX3CL1P78423 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CX3CL1P78423 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CX3CL1P78423 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.1□□□□□ -0.31
CX3CL1P78423 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CL1P78423 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
CX3CL1P78423 POU5F1P6-201ENST00000466990 990 ntBASIC13.1□□□□□ -0.31
CX3CL1P78423 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC13.1□□□□□ -0.31
CX3CL1P78423 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CL1P78423 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC13.1□□□□□ -0.31
CX3CL1P78423 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CX3CL1P78423 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CL1P78423 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CX3CL1P78423 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CL1P78423 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CX3CL1P78423 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CX3CL1P78423 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
CX3CL1P78423 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.1□□□□□ -0.31
CX3CL1P78423 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 VILL-207ENST00000465644 1857 ntTSL 5 BASIC13.1□□□□□ -0.31
CX3CL1P78423 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC13.1□□□□□ -0.31
CX3CL1P78423 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CL1P78423 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CL1P78423 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CX3CL1P78423 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CX3CL1P78423 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CX3CL1P78423 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CX3CL1P78423 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CX3CL1P78423 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC13.09□□□□□ -0.31
CX3CL1P78423 WASH6P-202ENST00000359512 1437 ntBASIC13.09□□□□□ -0.31
CX3CL1P78423 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC13.09□□□□□ -0.31
CX3CL1P78423 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
CX3CL1P78423 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CL1P78423 FAM58CP-201ENST00000435741 640 ntBASIC13.09□□□□□ -0.31
CX3CL1P78423 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC13.09□□□□□ -0.31
CX3CL1P78423 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.09□□□□□ -0.31
CX3CL1P78423 MTDHP5-201ENST00000598980 586 ntBASIC13.09□□□□□ -0.31
CX3CL1P78423 AL078644.1-201ENST00000609881 752 ntBASIC13.09□□□□□ -0.31
CX3CL1P78423 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CX3CL1P78423 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 AC091812.2-201ENST00000619081 385 ntBASIC13.09□□□□□ -0.31
CX3CL1P78423 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.09□□□□□ -0.31
CX3CL1P78423 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
CX3CL1P78423 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CL1P78423 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.09□□□□□ -0.31
CX3CL1P78423 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CL1P78423 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CX3CL1P78423 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CL1P78423 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CL1P78423 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CX3CL1P78423 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CX3CL1P78423 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CX3CL1P78423 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.31
CX3CL1P78423 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CX3CL1P78423 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CX3CL1P78423 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
CX3CL1P78423 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 NORAD-201ENST00000565493 5339 ntBASIC13.08□□□□□ -0.32
CX3CL1P78423 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
CX3CL1P78423 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms