Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.97□□□□□ -0.01
RNF4P78317 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.97□□□□□ -0.01
RNF4P78317 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 AL118508.1-201ENST00000613502 2345 ntBASIC14.97□□□□□ -0.01
RNF4P78317 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.97□□□□□ -0.01
RNF4P78317 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.97□□□□□ -0.01
RNF4P78317 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
RNF4P78317 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.97□□□□□ -0.01
RNF4P78317 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.97□□□□□ -0.01
RNF4P78317 AC092580.3-201ENST00000430932 139 ntBASIC14.97□□□□□ -0.01
RNF4P78317 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
RNF4P78317 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
RNF4P78317 HLA-V-204ENST00000476601 1289 ntBASIC14.97□□□□□ -0.01
RNF4P78317 AC027369.6-201ENST00000525520 931 ntBASIC14.97□□□□□ -0.01
RNF4P78317 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.97□□□□□ -0.01
RNF4P78317 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.97□□□□□ -0.01
RNF4P78317 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.97□□□□□ -0.01
RNF4P78317 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.97□□□□□ -0.01
RNF4P78317 AL138828.2-201ENST00000615812 383 ntBASIC14.97□□□□□ -0.01
RNF4P78317 SPDYE12P-201ENST00000618416 771 ntBASIC14.97□□□□□ -0.01
RNF4P78317 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.97□□□□□ -0.01
RNF4P78317 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.97□□□□□ -0.01
RNF4P78317 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.97□□□□□ -0.01
RNF4P78317 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.97□□□□□ -0.01
RNF4P78317 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC14.97□□□□□ -0.01
RNF4P78317 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
RNF4P78317 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.96□□□□□ -0.01
RNF4P78317 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.96□□□□□ -0.01
RNF4P78317 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.96□□□□□ -0.01
RNF4P78317 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
RNF4P78317 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.96□□□□□ -0.01
RNF4P78317 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
RNF4P78317 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.96□□□□□ -0.01
RNF4P78317 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.96□□□□□ -0.01
RNF4P78317 AC093214.1-201ENST00000511688 1107 ntBASIC14.96□□□□□ -0.01
RNF4P78317 AL079307.3-201ENST00000556114 283 ntBASIC14.96□□□□□ -0.01
RNF4P78317 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
RNF4P78317 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
RNF4P78317 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
RNF4P78317 MTHFR-217ENST00000641820 1569 ntBASIC14.96□□□□□ -0.01
RNF4P78317 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.96□□□□□ -0.01
RNF4P78317 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.96□□□□□ -0.01
RNF4P78317 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNF4P78317 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.96□□□□□ -0.02
RNF4P78317 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.96□□□□□ -0.02
RNF4P78317 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
RNF4P78317 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
RNF4P78317 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.96□□□□□ -0.02
RNF4P78317 AC006449.5-201ENST00000610658 2098 ntBASIC14.96□□□□□ -0.02
RNF4P78317 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.96□□□□□ -0.02
RNF4P78317 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.96□□□□□ -0.02
RNF4P78317 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
RNF4P78317 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.95□□□□□ -0.02
RNF4P78317 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
RNF4P78317 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.95□□□□□ -0.02
RNF4P78317 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
RNF4P78317 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
RNF4P78317 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms