Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
RHBDL3P58872 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
RHBDL3P58872 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.92■□□□□ 0.62
RHBDL3P58872 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC18.92■□□□□ 0.62
RHBDL3P58872 AL442647.2-201ENST00000429864 857 ntBASIC18.92■□□□□ 0.62
RHBDL3P58872 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC18.92■□□□□ 0.62
RHBDL3P58872 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.92■□□□□ 0.62
RHBDL3P58872 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.92■□□□□ 0.62
RHBDL3P58872 AC007389.4-201ENST00000454674 793 ntBASIC18.92■□□□□ 0.62
RHBDL3P58872 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.92■□□□□ 0.62
RHBDL3P58872 FAM86LP-201ENST00000478302 853 ntBASIC18.92■□□□□ 0.62
RHBDL3P58872 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.92■□□□□ 0.62
RHBDL3P58872 SLED1-202ENST00000512051 380 ntBASIC18.92■□□□□ 0.62
RHBDL3P58872 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.92■□□□□ 0.62
RHBDL3P58872 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.92■□□□□ 0.62
RHBDL3P58872 MIR6752-201ENST00000618442 71 ntBASIC18.92■□□□□ 0.62
RHBDL3P58872 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.92■□□□□ 0.62
RHBDL3P58872 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RHBDL3P58872 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.91■□□□□ 0.62
RHBDL3P58872 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.91■□□□□ 0.62
RHBDL3P58872 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RHBDL3P58872 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RHBDL3P58872 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.91■□□□□ 0.62
RHBDL3P58872 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
RHBDL3P58872 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
RHBDL3P58872 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
RHBDL3P58872 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
RHBDL3P58872 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.91■□□□□ 0.62
RHBDL3P58872 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.91■□□□□ 0.62
RHBDL3P58872 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
RHBDL3P58872 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.91■□□□□ 0.62
RHBDL3P58872 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC18.91■□□□□ 0.62
RHBDL3P58872 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.91■□□□□ 0.62
RHBDL3P58872 AC092364.2-201ENST00000596710 2692 ntBASIC18.91■□□□□ 0.62
RHBDL3P58872 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RHBDL3P58872 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RHBDL3P58872 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.91■□□□□ 0.62
RHBDL3P58872 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.91■□□□□ 0.62
RHBDL3P58872 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
RHBDL3P58872 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RHBDL3P58872 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.91■□□□□ 0.62
RHBDL3P58872 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RHBDL3P58872 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.9■□□□□ 0.62
RHBDL3P58872 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.9■□□□□ 0.62
RHBDL3P58872 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.9■□□□□ 0.62
RHBDL3P58872 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.9■□□□□ 0.62
RHBDL3P58872 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
RHBDL3P58872 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.9■□□□□ 0.62
RHBDL3P58872 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.9■□□□□ 0.62
RHBDL3P58872 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.9■□□□□ 0.62
RHBDL3P58872 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 MIR1909-201ENST00000411312 80 ntBASIC18.9■□□□□ 0.62
RHBDL3P58872 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.9■□□□□ 0.62
RHBDL3P58872 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC18.9■□□□□ 0.62
RHBDL3P58872 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.9■□□□□ 0.62
RHBDL3P58872 RAB43P1-201ENST00000561790 589 ntBASIC18.9■□□□□ 0.62
RHBDL3P58872 AC010319.3-201ENST00000597028 470 ntBASIC18.9■□□□□ 0.62
RHBDL3P58872 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
RHBDL3P58872 AL512343.1-201ENST00000605837 169 ntBASIC18.9■□□□□ 0.62
RHBDL3P58872 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.9■□□□□ 0.62
RHBDL3P58872 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RHBDL3P58872 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.89■□□□□ 0.62
RHBDL3P58872 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.89■□□□□ 0.62
RHBDL3P58872 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
RHBDL3P58872 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.89■□□□□ 0.62
RHBDL3P58872 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RHBDL3P58872 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RHBDL3P58872 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RHBDL3P58872 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.89■□□□□ 0.61
RHBDL3P58872 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RHBDL3P58872 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RHBDL3P58872 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
RHBDL3P58872 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.89■□□□□ 0.61
RHBDL3P58872 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
RHBDL3P58872 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RHBDL3P58872 MIR648-201ENST00000385046 94 ntBASIC18.89■□□□□ 0.61
RHBDL3P58872 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms