Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
RFX3P48380 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX3P48380 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX3P48380 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
RFX3P48380 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RFX3P48380 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RFX3P48380 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX3P48380 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX3P48380 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 FAM58CP-201ENST00000435741 640 ntBASIC15.28■□□□□ 0.04
RFX3P48380 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX3P48380 KRT18P34-201ENST00000488218 1270 ntBASIC15.28■□□□□ 0.04
RFX3P48380 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 AC112191.1-201ENST00000523689 701 ntBASIC15.28■□□□□ 0.04
RFX3P48380 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX3P48380 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.28■□□□□ 0.04
RFX3P48380 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.28■□□□□ 0.04
RFX3P48380 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.28■□□□□ 0.04
RFX3P48380 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
RFX3P48380 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 REXO1L8P-201ENST00000604378 1897 ntBASIC15.28■□□□□ 0.04
RFX3P48380 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
RFX3P48380 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
RFX3P48380 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
RFX3P48380 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX3P48380 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.28■□□□□ 0.04
RFX3P48380 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX3P48380 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX3P48380 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.28■□□□□ 0.04
RFX3P48380 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.27■□□□□ 0.04
RFX3P48380 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
RFX3P48380 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX3P48380 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
RFX3P48380 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
RFX3P48380 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.27■□□□□ 0.04
RFX3P48380 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX3P48380 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.27■□□□□ 0.04
RFX3P48380 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX3P48380 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX3P48380 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
RFX3P48380 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.27■□□□□ 0.04
RFX3P48380 AC002056.1-201ENST00000395613 760 ntBASIC15.27■□□□□ 0.04
RFX3P48380 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.27■□□□□ 0.04
RFX3P48380 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.27■□□□□ 0.04
RFX3P48380 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.27■□□□□ 0.04
RFX3P48380 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.27■□□□□ 0.04
RFX3P48380 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX3P48380 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
RFX3P48380 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX3P48380 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.27■□□□□ 0.04
RFX3P48380 AP002472.1-201ENST00000577490 586 ntBASIC15.27■□□□□ 0.04
RFX3P48380 AL671883.3-201ENST00000603274 991 ntBASIC15.27■□□□□ 0.04
RFX3P48380 AC091812.2-201ENST00000619081 385 ntBASIC15.27■□□□□ 0.04
RFX3P48380 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX3P48380 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX3P48380 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
RFX3P48380 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX3P48380 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.27■□□□□ 0.03
RFX3P48380 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.27■□□□□ 0.03
RFX3P48380 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX3P48380 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RFX3P48380 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX3P48380 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX3P48380 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.27■□□□□ 0.03
RFX3P48380 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX3P48380 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.27■□□□□ 0.03
RFX3P48380 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
RFX3P48380 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms