Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
PTPN9P43378 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN9P43378 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTPN9P43378 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 SPDYE7P-202ENST00000420373 878 ntBASIC16.78■□□□□ 0.28
PTPN9P43378 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.78■□□□□ 0.28
PTPN9P43378 AC105021.1-202ENST00000570572 669 ntBASIC16.78■□□□□ 0.28
PTPN9P43378 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.78■□□□□ 0.28
PTPN9P43378 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
PTPN9P43378 AP001160.2-201ENST00000596071 487 ntBASIC16.78■□□□□ 0.28
PTPN9P43378 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN9P43378 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
PTPN9P43378 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN9P43378 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN9P43378 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN9P43378 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.77■□□□□ 0.28
PTPN9P43378 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.77■□□□□ 0.28
PTPN9P43378 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.77■□□□□ 0.28
PTPN9P43378 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.77■□□□□ 0.28
PTPN9P43378 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.77■□□□□ 0.28
PTPN9P43378 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.77■□□□□ 0.28
PTPN9P43378 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
PTPN9P43378 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.77■□□□□ 0.28
PTPN9P43378 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.77■□□□□ 0.28
PTPN9P43378 AC139530.3-201ENST00000620344 690 ntBASIC16.77■□□□□ 0.28
PTPN9P43378 LINC00628-201ENST00000628516 1289 ntBASIC16.77■□□□□ 0.28
PTPN9P43378 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN9P43378 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
PTPN9P43378 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN9P43378 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN9P43378 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
PTPN9P43378 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
PTPN9P43378 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN9P43378 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN9P43378 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN9P43378 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN9P43378 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN9P43378 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN9P43378 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN9P43378 AL035456.1-201ENST00000456064 1369 ntBASIC16.77■□□□□ 0.27
PTPN9P43378 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.76■□□□□ 0.27
PTPN9P43378 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
PTPN9P43378 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PTPN9P43378 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 AL139400.1-201ENST00000366220 510 ntBASIC16.76■□□□□ 0.27
PTPN9P43378 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PTPN9P43378 TSEN15P1-201ENST00000423257 515 ntBASIC16.76■□□□□ 0.27
PTPN9P43378 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.76■□□□□ 0.27
PTPN9P43378 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.76■□□□□ 0.27
PTPN9P43378 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.76■□□□□ 0.27
PTPN9P43378 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.76■□□□□ 0.27
PTPN9P43378 AC003101.2-201ENST00000612557 442 ntBASIC16.76■□□□□ 0.27
PTPN9P43378 MIR6080-201ENST00000617359 66 ntBASIC16.76■□□□□ 0.27
PTPN9P43378 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PTPN9P43378 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
PTPN9P43378 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.76■□□□□ 0.27
PTPN9P43378 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
PTPN9P43378 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN9P43378 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
PTPN9P43378 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.76■□□□□ 0.27
PTPN9P43378 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms