Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
HNF4AP41235 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.75■□□□□ 0.11
HNF4AP41235 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.75■□□□□ 0.11
HNF4AP41235 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.75■□□□□ 0.11
HNF4AP41235 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
HNF4AP41235 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.75■□□□□ 0.11
HNF4AP41235 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
HNF4AP41235 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.74■□□□□ 0.11
HNF4AP41235 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.74■□□□□ 0.11
HNF4AP41235 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HNF4AP41235 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.74■□□□□ 0.11
HNF4AP41235 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HNF4AP41235 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.74■□□□□ 0.11
HNF4AP41235 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.74■□□□□ 0.11
HNF4AP41235 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.74■□□□□ 0.11
HNF4AP41235 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.74■□□□□ 0.11
HNF4AP41235 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
HNF4AP41235 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 AL355306.1-201ENST00000415580 579 ntBASIC15.74■□□□□ 0.11
HNF4AP41235 GPX1P2-201ENST00000429271 606 ntBASIC15.74■□□□□ 0.11
HNF4AP41235 AC245100.5-201ENST00000452108 331 ntBASIC15.74■□□□□ 0.11
HNF4AP41235 PRYP6-201ENST00000514804 343 ntBASIC15.74■□□□□ 0.11
HNF4AP41235 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.74■□□□□ 0.11
HNF4AP41235 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.74■□□□□ 0.11
HNF4AP41235 RARRES2P8-201ENST00000566335 367 ntBASIC15.74■□□□□ 0.11
HNF4AP41235 MIR4469-201ENST00000583919 79 ntBASIC15.74■□□□□ 0.11
HNF4AP41235 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HNF4AP41235 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.74■□□□□ 0.11
HNF4AP41235 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
HNF4AP41235 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.74■□□□□ 0.11
HNF4AP41235 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
HNF4AP41235 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
HNF4AP41235 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.74■□□□□ 0.11
HNF4AP41235 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.74■□□□□ 0.11
HNF4AP41235 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HNF4AP41235 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.74■□□□□ 0.11
HNF4AP41235 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HNF4AP41235 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
HNF4AP41235 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
HNF4AP41235 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HNF4AP41235 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
HNF4AP41235 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.73■□□□□ 0.11
HNF4AP41235 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.73■□□□□ 0.11
HNF4AP41235 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
HNF4AP41235 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.73■□□□□ 0.11
HNF4AP41235 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
HNF4AP41235 AKAP8P1-201ENST00000434743 1349 ntBASIC15.73■□□□□ 0.11
HNF4AP41235 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
HNF4AP41235 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.73■□□□□ 0.11
HNF4AP41235 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
HNF4AP41235 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
HNF4AP41235 RPSAP43-201ENST00000402237 625 ntBASIC15.73■□□□□ 0.11
HNF4AP41235 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.73■□□□□ 0.11
HNF4AP41235 UPF3AP3-201ENST00000420996 769 ntBASIC15.73■□□□□ 0.11
HNF4AP41235 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.73■□□□□ 0.11
HNF4AP41235 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.73■□□□□ 0.11
HNF4AP41235 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.73■□□□□ 0.11
HNF4AP41235 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.73■□□□□ 0.11
HNF4AP41235 TIMM8BP1-201ENST00000452384 211 ntBASIC15.73■□□□□ 0.11
HNF4AP41235 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.73■□□□□ 0.11
HNF4AP41235 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
HNF4AP41235 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
HNF4AP41235 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
HNF4AP41235 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.73■□□□□ 0.11
HNF4AP41235 AL135744.1-201ENST00000565098 629 ntBASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms