Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BRCA1P38398 POU5F1P6-201ENST00000466990 990 ntBASIC19.2■□□□□ 0.66
BRCA1P38398 AC024681.1-201ENST00000521917 487 ntBASIC19.2■□□□□ 0.66
BRCA1P38398 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRCA1P38398 PP12613-201ENST00000424958 2230 ntBASIC19.2■□□□□ 0.66
BRCA1P38398 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRCA1P38398 AC134407.2-201ENST00000625089 1978 ntBASIC19.2■□□□□ 0.66
BRCA1P38398 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRCA1P38398 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRCA1P38398 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC19.2■□□□□ 0.66
BRCA1P38398 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC19.2■□□□□ 0.66
BRCA1P38398 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.2■□□□□ 0.66
BRCA1P38398 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC19.2■□□□□ 0.66
BRCA1P38398 AC006480.2-201ENST00000609770 1337 ntBASIC19.2■□□□□ 0.66
BRCA1P38398 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BRCA1P38398 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BRCA1P38398 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
BRCA1P38398 POM121L8P-201ENST00000417732 1281 ntBASIC19.2■□□□□ 0.66
BRCA1P38398 POM121L9P-203ENST00000441984 1285 ntBASIC19.2■□□□□ 0.66
BRCA1P38398 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC19.2■□□□□ 0.66
BRCA1P38398 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC19.2■□□□□ 0.66
BRCA1P38398 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
BRCA1P38398 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC19.19■□□□□ 0.66
BRCA1P38398 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC19.19■□□□□ 0.66
BRCA1P38398 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
BRCA1P38398 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 TK1-203ENST00000588734 1681 ntTSL 2 BASIC19.19■□□□□ 0.66
BRCA1P38398 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC19.19■□□□□ 0.66
BRCA1P38398 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.19■□□□□ 0.66
BRCA1P38398 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC19.19■□□□□ 0.66
BRCA1P38398 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
BRCA1P38398 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
BRCA1P38398 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
BRCA1P38398 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC19.19■□□□□ 0.66
BRCA1P38398 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 REXO1L1P-202ENST00000608646 1974 ntBASIC19.19■□□□□ 0.66
BRCA1P38398 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRCA1P38398 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.19■□□□□ 0.66
BRCA1P38398 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
BRCA1P38398 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
BRCA1P38398 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC19.18■□□□□ 0.66
BRCA1P38398 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC19.18■□□□□ 0.66
BRCA1P38398 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
BRCA1P38398 GHSR-202ENST00000427970 912 ntBASIC19.18■□□□□ 0.66
BRCA1P38398 RGS5-214ENST00000429865 754 ntTSL 3 BASIC19.18■□□□□ 0.66
BRCA1P38398 MSRA-203ENST00000441698 788 ntTSL 2 BASIC19.18■□□□□ 0.66
BRCA1P38398 AL133466.1-201ENST00000447582 150 ntBASIC19.18■□□□□ 0.66
BRCA1P38398 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC19.18■□□□□ 0.66
BRCA1P38398 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC19.18■□□□□ 0.66
BRCA1P38398 AC103988.2-201ENST00000561804 725 ntBASIC19.18■□□□□ 0.66
BRCA1P38398 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC19.18■□□□□ 0.66
BRCA1P38398 AC022748.3-201ENST00000621828 275 ntBASIC19.18■□□□□ 0.66
BRCA1P38398 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
BRCA1P38398 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC19.18■□□□□ 0.66
BRCA1P38398 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.18■□□□□ 0.66
BRCA1P38398 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRCA1P38398 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
BRCA1P38398 SNX21-203ENST00000372541 771 ntTSL 2 BASIC19.18■□□□□ 0.66
BRCA1P38398 KLF2P2-201ENST00000416807 1039 ntBASIC19.18■□□□□ 0.66
BRCA1P38398 FAM8A4P-201ENST00000435433 1213 ntBASIC19.18■□□□□ 0.66
BRCA1P38398 AL391280.1-201ENST00000506969 1062 ntBASIC19.18■□□□□ 0.66
BRCA1P38398 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC19.18■□□□□ 0.66
BRCA1P38398 CTBP2P4-201ENST00000513884 920 ntBASIC19.18■□□□□ 0.66
BRCA1P38398 PTK2-225ENST00000520892 571 ntTSL 4 BASIC19.18■□□□□ 0.66
BRCA1P38398 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC19.18■□□□□ 0.66
BRCA1P38398 NPM1P43-201ENST00000558669 786 ntBASIC19.18■□□□□ 0.66
BRCA1P38398 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC19.18■□□□□ 0.66
BRCA1P38398 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRCA1P38398 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.17■□□□□ 0.66
BRCA1P38398 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.17■□□□□ 0.66
BRCA1P38398 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
BRCA1P38398 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms