Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC002472.2-201ENST00000442739 958 ntBASIC14.84□□□□□ -0.03
MSX1P28360 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX1P28360 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX1P28360 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX1P28360 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.84□□□□□ -0.03
MSX1P28360 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.84□□□□□ -0.03
MSX1P28360 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 AC140878.1-201ENST00000565277 250 ntBASIC14.84□□□□□ -0.03
MSX1P28360 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.84□□□□□ -0.03
MSX1P28360 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.84□□□□□ -0.03
MSX1P28360 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.84□□□□□ -0.03
MSX1P28360 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX1P28360 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX1P28360 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX1P28360 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
MSX1P28360 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
MSX1P28360 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX1P28360 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
MSX1P28360 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
MSX1P28360 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.83□□□□□ -0.03
MSX1P28360 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
MSX1P28360 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
MSX1P28360 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
MSX1P28360 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
MSX1P28360 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.83□□□□□ -0.03
MSX1P28360 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.83□□□□□ -0.03
MSX1P28360 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
MSX1P28360 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
MSX1P28360 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.83□□□□□ -0.04
MSX1P28360 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.04
MSX1P28360 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MSX1P28360 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.83□□□□□ -0.04
MSX1P28360 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.83□□□□□ -0.04
MSX1P28360 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.83□□□□□ -0.04
MSX1P28360 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.83□□□□□ -0.04
MSX1P28360 SPDYE7P-202ENST00000420373 878 ntBASIC14.83□□□□□ -0.04
MSX1P28360 AC005034.1-201ENST00000426657 489 ntBASIC14.83□□□□□ -0.04
MSX1P28360 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.83□□□□□ -0.04
MSX1P28360 TSPY16P-201ENST00000449843 468 ntBASIC14.83□□□□□ -0.04
MSX1P28360 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 RNA5SP410-201ENST00000516285 106 ntBASIC14.83□□□□□ -0.04
MSX1P28360 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MSX1P28360 ALG1L8P-201ENST00000533887 760 ntBASIC14.83□□□□□ -0.04
MSX1P28360 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.83□□□□□ -0.04
MSX1P28360 AL035252.4-201ENST00000624174 288 ntBASIC14.83□□□□□ -0.04
MSX1P28360 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MSX1P28360 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.83□□□□□ -0.04
MSX1P28360 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
MSX1P28360 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
MSX1P28360 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.83□□□□□ -0.04
MSX1P28360 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
MSX1P28360 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX1P28360 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.82□□□□□ -0.04
MSX1P28360 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.82□□□□□ -0.04
MSX1P28360 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 AP3S2-216ENST00000617003 1561 ntBASIC14.82□□□□□ -0.04
MSX1P28360 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.82□□□□□ -0.04
MSX1P28360 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
MSX1P28360 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.82□□□□□ -0.04
MSX1P28360 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 FAM207CP-201ENST00000443486 507 ntBASIC14.82□□□□□ -0.04
MSX1P28360 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 AC090142.2-201ENST00000483263 416 ntBASIC14.82□□□□□ -0.04
MSX1P28360 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
MSX1P28360 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.82□□□□□ -0.04
MSX1P28360 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.82□□□□□ -0.04
MSX1P28360 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.82□□□□□ -0.04
MSX1P28360 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms