Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.01■□□□□ 0.31
BDNFP23560 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.01■□□□□ 0.31
BDNFP23560 FAM207CP-201ENST00000443486 507 ntBASIC17.01■□□□□ 0.31
BDNFP23560 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 SERBP1P3-201ENST00000459980 809 ntBASIC17.01■□□□□ 0.31
BDNFP23560 SERBP1P5-201ENST00000510079 1181 ntBASIC17.01■□□□□ 0.31
BDNFP23560 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.01■□□□□ 0.31
BDNFP23560 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.01■□□□□ 0.31
BDNFP23560 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.01■□□□□ 0.31
BDNFP23560 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 AC008761.3-201ENST00000624803 892 ntBASIC17.01■□□□□ 0.31
BDNFP23560 AL033527.5-202ENST00000641632 1098 ntBASIC17.01■□□□□ 0.31
BDNFP23560 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
BDNFP23560 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.01■□□□□ 0.31
BDNFP23560 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
BDNFP23560 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.01■□□□□ 0.31
BDNFP23560 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17■□□□□ 0.31
BDNFP23560 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
BDNFP23560 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
BDNFP23560 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17■□□□□ 0.31
BDNFP23560 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17■□□□□ 0.31
BDNFP23560 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17■□□□□ 0.31
BDNFP23560 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
BDNFP23560 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17■□□□□ 0.31
BDNFP23560 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17■□□□□ 0.31
BDNFP23560 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
BDNFP23560 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17■□□□□ 0.31
BDNFP23560 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17■□□□□ 0.31
BDNFP23560 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17■□□□□ 0.31
BDNFP23560 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
BDNFP23560 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.99■□□□□ 0.31
BDNFP23560 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.99■□□□□ 0.31
BDNFP23560 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.99■□□□□ 0.31
BDNFP23560 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
BDNFP23560 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.99■□□□□ 0.31
BDNFP23560 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.99■□□□□ 0.31
BDNFP23560 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.99■□□□□ 0.31
BDNFP23560 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
BDNFP23560 AC004987.2-201ENST00000395959 1148 ntBASIC16.99■□□□□ 0.31
BDNFP23560 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.99■□□□□ 0.31
BDNFP23560 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.99■□□□□ 0.31
BDNFP23560 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.99■□□□□ 0.31
BDNFP23560 TERF1P3-201ENST00000505638 1227 ntBASIC16.99■□□□□ 0.31
BDNFP23560 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.99■□□□□ 0.31
BDNFP23560 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.99■□□□□ 0.31
BDNFP23560 AC044860.1-202ENST00000559481 777 ntBASIC16.99■□□□□ 0.31
BDNFP23560 AC243562.2-201ENST00000561247 970 ntBASIC16.99■□□□□ 0.31
BDNFP23560 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.99■□□□□ 0.31
BDNFP23560 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.99■□□□□ 0.31
BDNFP23560 AC004840.1-201ENST00000636359 365 ntBASIC16.99■□□□□ 0.31
BDNFP23560 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.99■□□□□ 0.31
BDNFP23560 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.99■□□□□ 0.31
BDNFP23560 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
BDNFP23560 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.99■□□□□ 0.31
BDNFP23560 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.99■□□□□ 0.31
BDNFP23560 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
BDNFP23560 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms