Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
MSH3P20585 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
MSH3P20585 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
MSH3P20585 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
MSH3P20585 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.14■□□□□ 0.17
MSH3P20585 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.14■□□□□ 0.17
MSH3P20585 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.14■□□□□ 0.17
MSH3P20585 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
MSH3P20585 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
MSH3P20585 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
MSH3P20585 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
MSH3P20585 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
MSH3P20585 HLA-H-201ENST00000383620 1096 ntBASIC16.14■□□□□ 0.17
MSH3P20585 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.14■□□□□ 0.17
MSH3P20585 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.14■□□□□ 0.17
MSH3P20585 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.14■□□□□ 0.17
MSH3P20585 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.14■□□□□ 0.17
MSH3P20585 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.14■□□□□ 0.17
MSH3P20585 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.14■□□□□ 0.17
MSH3P20585 AC027612.4-201ENST00000605371 583 ntBASIC16.14■□□□□ 0.17
MSH3P20585 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.14■□□□□ 0.17
MSH3P20585 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
MSH3P20585 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
MSH3P20585 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.14■□□□□ 0.17
MSH3P20585 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSH3P20585 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
MSH3P20585 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
MSH3P20585 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.13■□□□□ 0.17
MSH3P20585 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.13■□□□□ 0.17
MSH3P20585 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.13■□□□□ 0.17
MSH3P20585 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.13■□□□□ 0.17
MSH3P20585 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.13■□□□□ 0.17
MSH3P20585 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
MSH3P20585 ALG1L8P-201ENST00000533887 760 ntBASIC16.13■□□□□ 0.17
MSH3P20585 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.13■□□□□ 0.17
MSH3P20585 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.13■□□□□ 0.17
MSH3P20585 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.13■□□□□ 0.17
MSH3P20585 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.13■□□□□ 0.17
MSH3P20585 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.13■□□□□ 0.17
MSH3P20585 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.13■□□□□ 0.17
MSH3P20585 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
MSH3P20585 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSH3P20585 AP3S2-216ENST00000617003 1561 ntBASIC16.13■□□□□ 0.17
MSH3P20585 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.12■□□□□ 0.17
MSH3P20585 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.12■□□□□ 0.17
MSH3P20585 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.12■□□□□ 0.17
MSH3P20585 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.12■□□□□ 0.17
MSH3P20585 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 FAM220BP-201ENST00000377689 816 ntBASIC16.12■□□□□ 0.17
MSH3P20585 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.12■□□□□ 0.17
MSH3P20585 TSEN15P1-201ENST00000423257 515 ntBASIC16.12■□□□□ 0.17
MSH3P20585 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.12■□□□□ 0.17
MSH3P20585 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
MSH3P20585 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.12■□□□□ 0.17
MSH3P20585 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
MSH3P20585 AL596257.1-201ENST00000641463 2694 ntBASIC16.12■□□□□ 0.17
MSH3P20585 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.12■□□□□ 0.17
MSH3P20585 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.12■□□□□ 0.17
MSH3P20585 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms