Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 NAV2-204ENST00000396087 7882 ntTSL 5 BASIC13.1□□□□□ -0.31
HMGB3O15347 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.1□□□□□ -0.31
HMGB3O15347 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 MPRIP-205ENST00000395811 10960 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 MMP23A-201ENST00000234610 1017 ntBASIC13.1□□□□□ -0.31
HMGB3O15347 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 ANKRD20A18P-201ENST00000359341 492 ntBASIC13.1□□□□□ -0.31
HMGB3O15347 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 MIR718-201ENST00000390190 70 ntBASIC13.1□□□□□ -0.31
HMGB3O15347 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
HMGB3O15347 SLC25A3P1-201ENST00000443844 931 ntBASIC13.1□□□□□ -0.31
HMGB3O15347 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC13.1□□□□□ -0.31
HMGB3O15347 AC008550.1-201ENST00000511500 884 ntBASIC13.1□□□□□ -0.31
HMGB3O15347 TMA16-209ENST00000513272 803 ntTSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 RNF126P1-202ENST00000569893 925 ntBASIC13.1□□□□□ -0.31
HMGB3O15347 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 AL138966.2-201ENST00000621997 464 ntBASIC13.1□□□□□ -0.31
HMGB3O15347 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HMGB3O15347 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.1□□□□□ -0.31
HMGB3O15347 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 CDC14C-201ENST00000428251 1719 ntBASIC13.1□□□□□ -0.31
HMGB3O15347 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.1□□□□□ -0.31
HMGB3O15347 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
HMGB3O15347 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC13.1□□□□□ -0.31
HMGB3O15347 AC006277.1-201ENST00000624348 1610 ntBASIC13.1□□□□□ -0.31
HMGB3O15347 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 HARS-203ENST00000431330 1774 ntTSL 2 BASIC13.09□□□□□ -0.31
HMGB3O15347 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC13.09□□□□□ -0.31
HMGB3O15347 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
HMGB3O15347 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.09□□□□□ -0.31
HMGB3O15347 LINC01568-207ENST00000641790 1380 ntBASIC13.09□□□□□ -0.31
HMGB3O15347 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HMGB3O15347 AC006058.4-201ENST00000624016 1670 ntBASIC13.09□□□□□ -0.31
HMGB3O15347 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC13.09□□□□□ -0.31
HMGB3O15347 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HMGB3O15347 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 MTMR3-201ENST00000323630 5866 ntTSL 5 BASIC13.09□□□□□ -0.31
HMGB3O15347 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 AC003669.1-201ENST00000334569 611 ntBASIC13.09□□□□□ -0.31
HMGB3O15347 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.09□□□□□ -0.31
HMGB3O15347 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC13.09□□□□□ -0.31
HMGB3O15347 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC13.09□□□□□ -0.31
HMGB3O15347 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC13.09□□□□□ -0.31
HMGB3O15347 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC13.09□□□□□ -0.31
HMGB3O15347 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 FARP1-201ENST00000319562 10262 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HMGB3O15347 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.09□□□□□ -0.31
HMGB3O15347 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
HMGB3O15347 AC097637.2-201ENST00000624096 1997 ntBASIC13.09□□□□□ -0.31
HMGB3O15347 AC112504.1-201ENST00000623415 1841 ntBASIC13.09□□□□□ -0.31
HMGB3O15347 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
HMGB3O15347 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.08□□□□□ -0.31
HMGB3O15347 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HMGB3O15347 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
HMGB3O15347 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.31
HMGB3O15347 AC002310.6-201ENST00000624451 1377 ntBASIC13.08□□□□□ -0.31
HMGB3O15347 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HMGB3O15347 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.08□□□□□ -0.32
HMGB3O15347 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HMGB3O15347 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms