Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC103691.2-201ENST00000618824 433 ntBASIC12.29□□□□□ -0.44
COL6A5A8TX70 U82695.1-201ENST00000635752 1889 ntBASIC12.29□□□□□ -0.44
COL6A5A8TX70 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 GRN-214ENST00000589265 1632 ntTSL 5 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 AC015910.1-201ENST00000579400 975 ntBASIC12.29□□□□□ -0.44
COL6A5A8TX70 AC087045.2-201ENST00000606279 1003 ntBASIC12.29□□□□□ -0.44
COL6A5A8TX70 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 AC011742.3-201ENST00000439053 820 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 KRT18P25-201ENST00000508931 1278 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 ECM1P1-201ENST00000604092 1279 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 AC007881.3-201ENST00000608897 607 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 AC074138.1-201ENST00000611182 1303 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 AL357373.1-201ENST00000394974 322 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 HNRNPA1P63-201ENST00000427917 963 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 AL353637.1-201ENST00000451571 732 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 AC104073.2-201ENST00000453737 312 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 PPY2P-201ENST00000582808 702 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 AC138466.4-201ENST00000623965 852 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC12.28□□□□□ -0.44
COL6A5A8TX70 AL031731.1-201ENST00000642131 2094 ntBASIC12.28□□□□□ -0.44
COL6A5A8TX70 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL6A5A8TX70 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.44
COL6A5A8TX70 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
COL6A5A8TX70 DPM3-202ENST00000368399 517 ntBASIC12.27□□□□□ -0.44
COL6A5A8TX70 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
COL6A5A8TX70 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC12.27□□□□□ -0.44
COL6A5A8TX70 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC12.27□□□□□ -0.44
COL6A5A8TX70 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
COL6A5A8TX70 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.44
COL6A5A8TX70 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
COL6A5A8TX70 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.27□□□□□ -0.44
COL6A5A8TX70 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms