Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 AC011467.4-201ENST00000594891 528 ntBASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 AL365330.1-201ENST00000607459 531 ntBASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 AC022188.1-201ENST00000620960 1664 ntBASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.11■□□□□ 0.49
COL4A3BPQ9Y5P4 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 AC055876.3-201ENST00000431496 288 ntBASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 AC138649.4-201ENST00000612222 287 ntBASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 AC003101.2-201ENST00000612557 442 ntBASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
COL4A3BPQ9Y5P4 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 FO538757.1-201ENST00000623083 1397 ntBASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 TREML5P-201ENST00000421694 576 ntBASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 RNA5SP410-201ENST00000516285 106 ntBASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 SPCS2P1-201ENST00000561636 679 ntBASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms