Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 DEF8-202ENST00000418391 852 ntTSL 2 BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VPS13AQ96RL7 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 AL138781.2-201ENST00000617896 1843 ntBASIC15.7■□□□□ 0.1
VPS13AQ96RL7 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 CTBP2P4-201ENST00000513884 920 ntBASIC15.7■□□□□ 0.1
VPS13AQ96RL7 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 AC073352.2-201ENST00000609385 439 ntBASIC15.7■□□□□ 0.1
VPS13AQ96RL7 RN7SL736P-201ENST00000613111 269 ntBASIC15.7■□□□□ 0.1
VPS13AQ96RL7 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS13AQ96RL7 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 BAATP1-201ENST00000412284 1225 ntBASIC15.69■□□□□ 0.1
VPS13AQ96RL7 POM121L10P-201ENST00000436994 1285 ntBASIC15.69■□□□□ 0.1
VPS13AQ96RL7 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 SERPINA13P-202ENST00000478994 924 ntBASIC15.69■□□□□ 0.1
VPS13AQ96RL7 LY6E-208ENST00000520531 490 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 AC078819.1-201ENST00000547454 765 ntBASIC15.69■□□□□ 0.1
VPS13AQ96RL7 AC012085.1-201ENST00000548270 765 ntBASIC15.69■□□□□ 0.1
VPS13AQ96RL7 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 AC135983.4-201ENST00000564116 1262 ntBASIC15.69■□□□□ 0.1
VPS13AQ96RL7 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms