Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC19.07■□□□□ 0.64
BRF1Q92994 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC19.07■□□□□ 0.64
BRF1Q92994 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.07■□□□□ 0.64
BRF1Q92994 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.07■□□□□ 0.64
BRF1Q92994 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.07■□□□□ 0.64
BRF1Q92994 AL592309.1-201ENST00000443127 649 ntBASIC19.07■□□□□ 0.64
BRF1Q92994 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.07■□□□□ 0.64
BRF1Q92994 IGHV3-62-201ENST00000520057 340 ntBASIC19.07■□□□□ 0.64
BRF1Q92994 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC19.07■□□□□ 0.64
BRF1Q92994 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.07■□□□□ 0.64
BRF1Q92994 AC061975.2-201ENST00000581722 295 ntBASIC19.07■□□□□ 0.64
BRF1Q92994 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.07■□□□□ 0.64
BRF1Q92994 AC022145.2-201ENST00000598203 171 ntBASIC19.07■□□□□ 0.64
BRF1Q92994 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.07■□□□□ 0.64
BRF1Q92994 AC105339.1-204ENST00000636249 355 ntBASIC19.07■□□□□ 0.64
BRF1Q92994 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
BRF1Q92994 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
BRF1Q92994 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
BRF1Q92994 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC19.07■□□□□ 0.64
BRF1Q92994 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC19.06■□□□□ 0.64
BRF1Q92994 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
BRF1Q92994 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
BRF1Q92994 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 AP005117.1-202ENST00000581724 1908 ntBASIC19.06■□□□□ 0.64
BRF1Q92994 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.06■□□□□ 0.64
BRF1Q92994 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.06■□□□□ 0.64
BRF1Q92994 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 RPSAP43-201ENST00000402237 625 ntBASIC19.06■□□□□ 0.64
BRF1Q92994 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.06■□□□□ 0.64
BRF1Q92994 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.06■□□□□ 0.64
BRF1Q92994 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.06■□□□□ 0.64
BRF1Q92994 KRT8P23-201ENST00000560090 1207 ntBASIC19.06■□□□□ 0.64
BRF1Q92994 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.06■□□□□ 0.64
BRF1Q92994 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.06■□□□□ 0.64
BRF1Q92994 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.06■□□□□ 0.64
BRF1Q92994 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.06■□□□□ 0.64
BRF1Q92994 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
BRF1Q92994 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
BRF1Q92994 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
BRF1Q92994 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.06■□□□□ 0.64
BRF1Q92994 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
BRF1Q92994 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRF1Q92994 UXT-AS1-201ENST00000590504 1525 ntBASIC19.05■□□□□ 0.64
BRF1Q92994 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.05■□□□□ 0.64
BRF1Q92994 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC19.05■□□□□ 0.64
BRF1Q92994 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
BRF1Q92994 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.05■□□□□ 0.64
BRF1Q92994 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.05■□□□□ 0.64
BRF1Q92994 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.05■□□□□ 0.64
BRF1Q92994 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.05■□□□□ 0.64
BRF1Q92994 SLC25A39P2-201ENST00000537614 270 ntBASIC19.05■□□□□ 0.64
BRF1Q92994 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.05■□□□□ 0.64
BRF1Q92994 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms