Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 AL080243.2-201ENST00000418783 582 ntBASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 IGHV3-62-201ENST00000520057 340 ntBASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 AC026150.2-201ENST00000564693 1156 ntBASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 RN7SL204P-201ENST00000582831 262 ntBASIC16.46■□□□□ 0.22
SHROOM3Q8TF72 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 CICP6-201ENST00000457191 2729 ntBASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 HAUS4P1-201ENST00000406739 1145 ntBASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 AC092580.3-201ENST00000430932 139 ntBASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 EEF1DP4-201ENST00000446006 880 ntBASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHROOM3Q8TF72 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 MIR346-201ENST00000362234 95 ntBASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 AL353705.2-201ENST00000428243 662 ntBASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 MIR4745-201ENST00000577608 62 ntBASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 AP001282.1-201ENST00000531301 1499 ntBASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 KRT8P12-202ENST00000472924 1397 ntBASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 AL133215.2-201ENST00000609242 977 ntBASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms