Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.92□□□□□ -0.18
ABCA4P78363 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.92□□□□□ -0.18
ABCA4P78363 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.92□□□□□ -0.18
ABCA4P78363 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 AC024267.1-201ENST00000582320 895 ntBASIC13.92□□□□□ -0.18
ABCA4P78363 TMEM261P1-201ENST00000604899 340 ntBASIC13.92□□□□□ -0.18
ABCA4P78363 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC13.92□□□□□ -0.18
ABCA4P78363 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
ABCA4P78363 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
ABCA4P78363 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
ABCA4P78363 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.91□□□□□ -0.18
ABCA4P78363 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.91□□□□□ -0.18
ABCA4P78363 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 FADS2-205ENST00000517839 469 ntTSL 3 BASIC13.91□□□□□ -0.18
ABCA4P78363 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.91□□□□□ -0.18
ABCA4P78363 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.91□□□□□ -0.18
ABCA4P78363 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.91□□□□□ -0.18
ABCA4P78363 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 AC010319.3-201ENST00000597028 470 ntBASIC13.91□□□□□ -0.18
ABCA4P78363 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 WFDC1-204ENST00000613603 549 ntBASIC13.91□□□□□ -0.18
ABCA4P78363 MIR6069-201ENST00000620069 79 ntBASIC13.91□□□□□ -0.18
ABCA4P78363 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC13.91□□□□□ -0.18
ABCA4P78363 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
ABCA4P78363 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA4P78363 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA4P78363 AL136982.4-201ENST00000437689 1740 ntBASIC13.91□□□□□ -0.18
ABCA4P78363 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
ABCA4P78363 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 KRT223P-202ENST00000449164 1292 ntBASIC13.9□□□□□ -0.18
ABCA4P78363 WNT11-204ENST00000621122 789 ntTSL 5 BASIC13.9□□□□□ -0.18
ABCA4P78363 PCGF3-213ENST00000620529 1899 ntBASIC13.9□□□□□ -0.18
ABCA4P78363 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.9□□□□□ -0.18
ABCA4P78363 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
ABCA4P78363 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
ABCA4P78363 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC13.9□□□□□ -0.18
ABCA4P78363 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.9□□□□□ -0.18
ABCA4P78363 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
ABCA4P78363 ELK2AP-201ENST00000392510 1007 ntBASIC13.9□□□□□ -0.18
ABCA4P78363 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.9□□□□□ -0.18
ABCA4P78363 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 PARP8-206ENST00000503665 572 ntTSL 4 BASIC13.9□□□□□ -0.18
ABCA4P78363 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.9□□□□□ -0.18
ABCA4P78363 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.9□□□□□ -0.18
ABCA4P78363 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC13.9□□□□□ -0.18
ABCA4P78363 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.9□□□□□ -0.18
ABCA4P78363 AC023310.3-201ENST00000557027 670 ntBASIC13.9□□□□□ -0.18
ABCA4P78363 AC100756.1-201ENST00000562736 682 ntBASIC13.9□□□□□ -0.18
ABCA4P78363 AC138749.3-201ENST00000567691 622 ntBASIC13.9□□□□□ -0.18
ABCA4P78363 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.9□□□□□ -0.18
ABCA4P78363 AC116165.1-201ENST00000611806 668 ntBASIC13.9□□□□□ -0.18
ABCA4P78363 AC004461.2-201ENST00000629517 803 ntBASIC13.9□□□□□ -0.18
ABCA4P78363 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC13.9□□□□□ -0.18
ABCA4P78363 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms