Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP46P62068 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP46P62068 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP46P62068 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP46P62068 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.06■□□□□ 0.32
USP46P62068 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.06■□□□□ 0.32
USP46P62068 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP46P62068 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP46P62068 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
USP46P62068 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP46P62068 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
USP46P62068 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.05■□□□□ 0.32
USP46P62068 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.05■□□□□ 0.32
USP46P62068 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.05■□□□□ 0.32
USP46P62068 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.05■□□□□ 0.32
USP46P62068 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
USP46P62068 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.05■□□□□ 0.32
USP46P62068 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.05■□□□□ 0.32
USP46P62068 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.05■□□□□ 0.32
USP46P62068 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.05■□□□□ 0.32
USP46P62068 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.05■□□□□ 0.32
USP46P62068 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.05■□□□□ 0.32
USP46P62068 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 AC138761.1-201ENST00000584393 385 ntBASIC17.05■□□□□ 0.32
USP46P62068 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.05■□□□□ 0.32
USP46P62068 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.05■□□□□ 0.32
USP46P62068 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP46P62068 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
USP46P62068 AC079328.2-201ENST00000561241 3354 ntBASIC17.05■□□□□ 0.32
USP46P62068 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
USP46P62068 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.04■□□□□ 0.32
USP46P62068 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
USP46P62068 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP46P62068 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
USP46P62068 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 AL035633.1-201ENST00000406139 838 ntBASIC17.04■□□□□ 0.32
USP46P62068 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.04■□□□□ 0.32
USP46P62068 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.04■□□□□ 0.32
USP46P62068 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.04■□□□□ 0.32
USP46P62068 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.04■□□□□ 0.32
USP46P62068 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.04■□□□□ 0.32
USP46P62068 AL844908.2-201ENST00000609461 460 ntBASIC17.04■□□□□ 0.32
USP46P62068 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USP46P62068 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.04■□□□□ 0.32
USP46P62068 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
USP46P62068 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.04■□□□□ 0.32
USP46P62068 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP46P62068 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.04■□□□□ 0.32
USP46P62068 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.04■□□□□ 0.32
USP46P62068 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
USP46P62068 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
USP46P62068 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP46P62068 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP46P62068 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
USP46P62068 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.03■□□□□ 0.32
USP46P62068 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP46P62068 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP46P62068 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms