Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC20.89■□□□□ 0.93
COL18A1P39060 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
COL18A1P39060 REEP1-202ENST00000453231 940 ntTSL 2 BASIC20.89■□□□□ 0.93
COL18A1P39060 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC20.89■□□□□ 0.93
COL18A1P39060 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC20.89■□□□□ 0.93
COL18A1P39060 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC20.89■□□□□ 0.93
COL18A1P39060 CHMP4BP1-201ENST00000556017 588 ntBASIC20.89■□□□□ 0.93
COL18A1P39060 MIR4741-201ENST00000579822 90 ntBASIC20.89■□□□□ 0.93
COL18A1P39060 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC20.89■□□□□ 0.93
COL18A1P39060 AC106872.11-201ENST00000605838 421 ntBASIC20.89■□□□□ 0.93
COL18A1P39060 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
COL18A1P39060 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 GRN-222ENST00000639447 1314 ntTSL 2 BASIC20.89■□□□□ 0.93
COL18A1P39060 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
COL18A1P39060 AC018470.1-201ENST00000624790 3129 ntBASIC20.89■□□□□ 0.93
COL18A1P39060 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL18A1P39060 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
COL18A1P39060 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
COL18A1P39060 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL18A1P39060 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL18A1P39060 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL18A1P39060 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL18A1P39060 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL18A1P39060 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC20.88■□□□□ 0.93
COL18A1P39060 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC20.88■□□□□ 0.93
COL18A1P39060 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC20.88■□□□□ 0.93
COL18A1P39060 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC20.88■□□□□ 0.93
COL18A1P39060 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC20.88■□□□□ 0.93
COL18A1P39060 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL18A1P39060 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL18A1P39060 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL18A1P39060 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL18A1P39060 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
COL18A1P39060 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.88■□□□□ 0.93
COL18A1P39060 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL18A1P39060 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC20.88■□□□□ 0.93
COL18A1P39060 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC20.87■□□□□ 0.93
COL18A1P39060 HIST2H2BC-201ENST00000498492 580 ntBASIC20.87■□□□□ 0.93
COL18A1P39060 NEU3-202ENST00000526068 431 ntTSL 2 BASIC20.87■□□□□ 0.93
COL18A1P39060 AP003171.2-201ENST00000528208 925 ntBASIC20.87■□□□□ 0.93
COL18A1P39060 AL022328.3-201ENST00000607943 679 ntBASIC20.87■□□□□ 0.93
COL18A1P39060 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC20.87■□□□□ 0.93
COL18A1P39060 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC20.87■□□□□ 0.93
COL18A1P39060 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL18A1P39060 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL18A1P39060 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC20.87■□□□□ 0.93
COL18A1P39060 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC20.87■□□□□ 0.93
COL18A1P39060 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC20.87■□□□□ 0.93
COL18A1P39060 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC20.87■□□□□ 0.93
COL18A1P39060 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC20.87■□□□□ 0.93
COL18A1P39060 SCARNA20.5-201ENST00000516991 142 ntBASIC20.87■□□□□ 0.93
COL18A1P39060 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 EHF-205ENST00000527935 557 ntTSL 2 BASIC20.87■□□□□ 0.93
COL18A1P39060 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC20.87■□□□□ 0.93
COL18A1P39060 EEF1DP1-201ENST00000585891 896 ntBASIC20.87■□□□□ 0.93
COL18A1P39060 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
COL18A1P39060 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC20.87■□□□□ 0.93
COL18A1P39060 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL18A1P39060 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC20.87■□□□□ 0.93
COL18A1P39060 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
COL18A1P39060 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL18A1P39060 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC20.87■□□□□ 0.93
COL18A1P39060 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL18A1P39060 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.86■□□□□ 0.93
COL18A1P39060 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL18A1P39060 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL18A1P39060 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC20.86■□□□□ 0.93
COL18A1P39060 ALOX12P2-203ENST00000570921 1945 ntBASIC20.86■□□□□ 0.93
COL18A1P39060 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC20.86■□□□□ 0.93
COL18A1P39060 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
COL18A1P39060 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
COL18A1P39060 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC20.86■□□□□ 0.93
COL18A1P39060 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
COL18A1P39060 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
COL18A1P39060 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL18A1P39060 AC092506.1-202ENST00000401022 528 ntBASIC20.86■□□□□ 0.93
COL18A1P39060 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
COL18A1P39060 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms