Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC19.23■□□□□ 0.67
BRCA1P38398 COX5BP1-201ENST00000507622 393 ntBASIC19.23■□□□□ 0.67
BRCA1P38398 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC19.23■□□□□ 0.67
BRCA1P38398 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC19.23■□□□□ 0.67
BRCA1P38398 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
BRCA1P38398 MIR4750-201ENST00000584564 56 ntBASIC19.23■□□□□ 0.67
BRCA1P38398 UBL5-208ENST00000593087 320 ntTSL 3 BASIC19.23■□□□□ 0.67
BRCA1P38398 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC19.23■□□□□ 0.67
BRCA1P38398 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC19.23■□□□□ 0.67
BRCA1P38398 CU633904.3-201ENST00000624042 1029 ntBASIC19.23■□□□□ 0.67
BRCA1P38398 CDK7-214ENST00000626796 358 ntTSL 5 BASIC19.23■□□□□ 0.67
BRCA1P38398 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC19.23■□□□□ 0.67
BRCA1P38398 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRCA1P38398 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BRCA1P38398 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRCA1P38398 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRCA1P38398 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRCA1P38398 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRCA1P38398 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC19.23■□□□□ 0.67
BRCA1P38398 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 B9D1-203ENST00000395615 805 ntTSL 3 BASIC19.22■□□□□ 0.67
BRCA1P38398 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC19.22■□□□□ 0.67
BRCA1P38398 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC19.22■□□□□ 0.67
BRCA1P38398 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC19.22■□□□□ 0.67
BRCA1P38398 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC19.22■□□□□ 0.67
BRCA1P38398 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 RN7SL713P-201ENST00000582127 302 ntBASIC19.22■□□□□ 0.67
BRCA1P38398 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.22■□□□□ 0.67
BRCA1P38398 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
BRCA1P38398 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
BRCA1P38398 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
BRCA1P38398 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.22■□□□□ 0.67
BRCA1P38398 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
BRCA1P38398 AC114501.1-201ENST00000445949 172 ntBASIC19.22■□□□□ 0.67
BRCA1P38398 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC19.22■□□□□ 0.67
BRCA1P38398 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
BRCA1P38398 RN7SL774P-201ENST00000577467 290 ntBASIC19.22■□□□□ 0.67
BRCA1P38398 PPY2P-201ENST00000582808 702 ntBASIC19.22■□□□□ 0.67
BRCA1P38398 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
BRCA1P38398 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BRCA1P38398 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.21■□□□□ 0.67
BRCA1P38398 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC19.21■□□□□ 0.67
BRCA1P38398 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRCA1P38398 TUBBP5-203ENST00000508529 1334 ntBASIC19.21■□□□□ 0.67
BRCA1P38398 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BRCA1P38398 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.21■□□□□ 0.67
BRCA1P38398 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.21■□□□□ 0.67
BRCA1P38398 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRCA1P38398 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC19.21■□□□□ 0.67
BRCA1P38398 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRCA1P38398 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRCA1P38398 PGGT1BP2-201ENST00000398621 1028 ntBASIC19.21■□□□□ 0.67
BRCA1P38398 PDIA3P2-201ENST00000428073 158 ntBASIC19.21■□□□□ 0.67
BRCA1P38398 AC234782.1-201ENST00000451950 919 ntBASIC19.21■□□□□ 0.67
BRCA1P38398 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC19.21■□□□□ 0.67
BRCA1P38398 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC19.21■□□□□ 0.67
BRCA1P38398 AC116345.2-201ENST00000512837 523 ntBASIC19.21■□□□□ 0.67
BRCA1P38398 NCK2-206ENST00000522586 490 ntTSL 5 BASIC19.21■□□□□ 0.67
BRCA1P38398 AC106820.3-201ENST00000561653 397 ntBASIC19.21■□□□□ 0.67
BRCA1P38398 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC19.21■□□□□ 0.67
BRCA1P38398 AC007663.3-201ENST00000609632 465 ntBASIC19.21■□□□□ 0.67
BRCA1P38398 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.21■□□□□ 0.67
BRCA1P38398 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRCA1P38398 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
BRCA1P38398 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.21■□□□□ 0.67
BRCA1P38398 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BRCA1P38398 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRCA1P38398 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.21■□□□□ 0.67
BRCA1P38398 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
BRCA1P38398 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.2■□□□□ 0.66
BRCA1P38398 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRCA1P38398 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRCA1P38398 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRCA1P38398 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRCA1P38398 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
BRCA1P38398 CD8B2-202ENST00000417670 633 ntBASIC19.2■□□□□ 0.66
BRCA1P38398 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms