Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL6A3P12111 AC011742.3-201ENST00000439053 820 ntBASIC16.46■□□□□ 0.23
COL6A3P12111 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL6A3P12111 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC16.46■□□□□ 0.23
COL6A3P12111 AC242376.2-201ENST00000619355 883 ntBASIC16.46■□□□□ 0.23
COL6A3P12111 AC132938.4-201ENST00000623835 848 ntBASIC16.46■□□□□ 0.23
COL6A3P12111 AL132780.4-201ENST00000624870 1135 ntBASIC16.46■□□□□ 0.23
COL6A3P12111 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.46■□□□□ 0.23
COL6A3P12111 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL6A3P12111 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL6A3P12111 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
COL6A3P12111 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL6A3P12111 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL6A3P12111 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL6A3P12111 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
COL6A3P12111 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.46■□□□□ 0.22
COL6A3P12111 AC073413.1-201ENST00000603927 732 ntBASIC16.46■□□□□ 0.22
COL6A3P12111 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.46■□□□□ 0.22
COL6A3P12111 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
COL6A3P12111 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL6A3P12111 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.46■□□□□ 0.22
COL6A3P12111 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL6A3P12111 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.46■□□□□ 0.22
COL6A3P12111 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL6A3P12111 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.46■□□□□ 0.22
COL6A3P12111 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL6A3P12111 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL6A3P12111 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
COL6A3P12111 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A3P12111 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
COL6A3P12111 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.45■□□□□ 0.22
COL6A3P12111 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A3P12111 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
COL6A3P12111 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.45■□□□□ 0.22
COL6A3P12111 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
COL6A3P12111 AC243562.2-201ENST00000561247 970 ntBASIC16.45■□□□□ 0.22
COL6A3P12111 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A3P12111 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC16.45■□□□□ 0.22
COL6A3P12111 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A3P12111 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A3P12111 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.45■□□□□ 0.22
COL6A3P12111 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
COL6A3P12111 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.45■□□□□ 0.22
COL6A3P12111 ENPP7P8-202ENST00000527856 1345 ntBASIC16.45■□□□□ 0.22
COL6A3P12111 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A3P12111 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A3P12111 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
COL6A3P12111 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A3P12111 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.45■□□□□ 0.22
COL6A3P12111 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
COL6A3P12111 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
COL6A3P12111 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.45■□□□□ 0.22
COL6A3P12111 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.45■□□□□ 0.22
COL6A3P12111 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A3P12111 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.45■□□□□ 0.22
COL6A3P12111 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A3P12111 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC16.45■□□□□ 0.22
COL6A3P12111 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A3P12111 HIST2H2BB-201ENST00000449108 381 ntBASIC16.44■□□□□ 0.22
COL6A3P12111 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A3P12111 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.44■□□□□ 0.22
COL6A3P12111 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 AL353622.2-201ENST00000605846 425 ntBASIC16.44■□□□□ 0.22
COL6A3P12111 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.44■□□□□ 0.22
COL6A3P12111 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
COL6A3P12111 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
COL6A3P12111 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.44■□□□□ 0.22
COL6A3P12111 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
COL6A3P12111 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
COL6A3P12111 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 AC074338.1-201ENST00000416825 156 ntBASIC16.44■□□□□ 0.22
COL6A3P12111 TUBB8P8-201ENST00000458717 1058 ntBASIC16.44■□□□□ 0.22
COL6A3P12111 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC16.44■□□□□ 0.22
COL6A3P12111 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A3P12111 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A3P12111 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
COL6A3P12111 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A3P12111 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A3P12111 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A3P12111 GGT4P-201ENST00000623672 1708 ntBASIC16.43■□□□□ 0.22
COL6A3P12111 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A3P12111 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.43■□□□□ 0.22
COL6A3P12111 HNRNPA1P58-201ENST00000403629 610 ntBASIC16.43■□□□□ 0.22
COL6A3P12111 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC16.43■□□□□ 0.22
COL6A3P12111 PFN2-206ENST00000461930 606 ntTSL 4 BASIC16.43■□□□□ 0.22
COL6A3P12111 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.43■□□□□ 0.22
COL6A3P12111 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.43■□□□□ 0.22
COL6A3P12111 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
COL6A3P12111 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
COL6A3P12111 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms