Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TNFP01375 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.76■□□□□ 0.11
TNFP01375 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.76■□□□□ 0.11
TNFP01375 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.76■□□□□ 0.11
TNFP01375 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.76■□□□□ 0.11
TNFP01375 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.76■□□□□ 0.11
TNFP01375 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.76■□□□□ 0.11
TNFP01375 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 AC092171.3-201ENST00000610122 2651 ntBASIC15.75■□□□□ 0.11
TNFP01375 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.75■□□□□ 0.11
TNFP01375 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.75■□□□□ 0.11
TNFP01375 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.75■□□□□ 0.11
TNFP01375 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.75■□□□□ 0.11
TNFP01375 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.75■□□□□ 0.11
TNFP01375 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
TNFP01375 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.75■□□□□ 0.11
TNFP01375 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.75■□□□□ 0.11
TNFP01375 MEP1AP4-201ENST00000423244 1087 ntBASIC15.75■□□□□ 0.11
TNFP01375 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.75■□□□□ 0.11
TNFP01375 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.75■□□□□ 0.11
TNFP01375 GAPDHP21-201ENST00000450301 1010 ntBASIC15.75■□□□□ 0.11
TNFP01375 SPDYE18-201ENST00000510091 1050 ntBASIC15.75■□□□□ 0.11
TNFP01375 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.75■□□□□ 0.11
TNFP01375 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.75■□□□□ 0.11
TNFP01375 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.75■□□□□ 0.11
TNFP01375 AC074044.1-201ENST00000609673 707 ntBASIC15.75■□□□□ 0.11
TNFP01375 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
TNFP01375 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
TNFP01375 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.75■□□□□ 0.11
TNFP01375 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
TNFP01375 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.75■□□□□ 0.11
TNFP01375 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 AD000864.1-201ENST00000624076 2295 ntBASIC15.75■□□□□ 0.11
TNFP01375 AC005052.1-201ENST00000625181 2492 ntBASIC15.75■□□□□ 0.11
TNFP01375 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.75■□□□□ 0.11
TNFP01375 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
TNFP01375 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.75■□□□□ 0.11
TNFP01375 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
TNFP01375 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TNFP01375 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
TNFP01375 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.74■□□□□ 0.11
TNFP01375 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
TNFP01375 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.74■□□□□ 0.11
TNFP01375 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 HIST3H2BA-201ENST00000436555 524 ntBASIC15.74■□□□□ 0.11
TNFP01375 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.74■□□□□ 0.11
TNFP01375 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.74■□□□□ 0.11
TNFP01375 TPRX2P-201ENST00000535362 881 ntBASIC15.74■□□□□ 0.11
TNFP01375 CR383656.12-201ENST00000549567 513 ntBASIC15.74■□□□□ 0.11
TNFP01375 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.74■□□□□ 0.11
TNFP01375 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.74■□□□□ 0.11
TNFP01375 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.74■□□□□ 0.11
TNFP01375 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.74■□□□□ 0.11
TNFP01375 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.74■□□□□ 0.11
TNFP01375 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.74■□□□□ 0.11
TNFP01375 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.74■□□□□ 0.11
TNFP01375 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.74■□□□□ 0.11
TNFP01375 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
TNFP01375 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.74■□□□□ 0.11
TNFP01375 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.74■□□□□ 0.11
TNFP01375 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.74■□□□□ 0.11
TNFP01375 KRT8P37-201ENST00000451609 1420 ntBASIC15.74■□□□□ 0.11
TNFP01375 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
TNFP01375 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.74■□□□□ 0.11
TNFP01375 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
TNFP01375 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TNFP01375 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
TNFP01375 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms