Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.12■□□□□ 0.49
GGPS1O95749 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
GGPS1O95749 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.12■□□□□ 0.49
GGPS1O95749 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.12■□□□□ 0.49
GGPS1O95749 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.12■□□□□ 0.49
GGPS1O95749 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.12■□□□□ 0.49
GGPS1O95749 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.12■□□□□ 0.49
GGPS1O95749 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.12■□□□□ 0.49
GGPS1O95749 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.12■□□□□ 0.49
GGPS1O95749 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
GGPS1O95749 CR383656.12-201ENST00000549567 513 ntBASIC18.12■□□□□ 0.49
GGPS1O95749 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
GGPS1O95749 SRD5A3P1-201ENST00000603021 949 ntBASIC18.12■□□□□ 0.49
GGPS1O95749 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
GGPS1O95749 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.12■□□□□ 0.49
GGPS1O95749 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
GGPS1O95749 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
GGPS1O95749 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
GGPS1O95749 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
GGPS1O95749 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.12■□□□□ 0.49
GGPS1O95749 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
GGPS1O95749 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
GGPS1O95749 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.11■□□□□ 0.49
GGPS1O95749 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.11■□□□□ 0.49
GGPS1O95749 CD81-207ENST00000481687 890 ntTSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.11■□□□□ 0.49
GGPS1O95749 AC093004.1-201ENST00000508850 424 ntBASIC18.11■□□□□ 0.49
GGPS1O95749 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.11■□□□□ 0.49
GGPS1O95749 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
GGPS1O95749 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.11■□□□□ 0.49
GGPS1O95749 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
GGPS1O95749 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.11■□□□□ 0.49
GGPS1O95749 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
GGPS1O95749 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
GGPS1O95749 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
GGPS1O95749 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
GGPS1O95749 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
GGPS1O95749 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.1■□□□□ 0.49
GGPS1O95749 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.1■□□□□ 0.49
GGPS1O95749 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.1■□□□□ 0.49
GGPS1O95749 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 HIST3H2BA-201ENST00000436555 524 ntBASIC18.1■□□□□ 0.49
GGPS1O95749 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.1■□□□□ 0.49
GGPS1O95749 AL589987.1-201ENST00000453380 819 ntBASIC18.1■□□□□ 0.49
GGPS1O95749 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.1■□□□□ 0.49
GGPS1O95749 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.1■□□□□ 0.49
GGPS1O95749 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.1■□□□□ 0.49
GGPS1O95749 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.1■□□□□ 0.49
GGPS1O95749 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.1■□□□□ 0.49
GGPS1O95749 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.1■□□□□ 0.49
GGPS1O95749 CHCHD2P3-201ENST00000603038 451 ntBASIC18.1■□□□□ 0.49
GGPS1O95749 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
GGPS1O95749 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.1■□□□□ 0.49
GGPS1O95749 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.1■□□□□ 0.49
GGPS1O95749 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
GGPS1O95749 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms