Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.59■□□□□ 0.41
RNF40O75150 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
RNF40O75150 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
RNF40O75150 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
RNF40O75150 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
RNF40O75150 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF40O75150 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RNF40O75150 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.58■□□□□ 0.41
RNF40O75150 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.58■□□□□ 0.41
RNF40O75150 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RNF40O75150 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
RNF40O75150 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
RNF40O75150 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
RNF40O75150 AC013268.4-201ENST00000637413 2228 ntBASIC17.58■□□□□ 0.4
RNF40O75150 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.58■□□□□ 0.4
RNF40O75150 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RNF40O75150 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.58■□□□□ 0.4
RNF40O75150 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RNF40O75150 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.58■□□□□ 0.4
RNF40O75150 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
RNF40O75150 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.58■□□□□ 0.4
RNF40O75150 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.58■□□□□ 0.4
RNF40O75150 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.58■□□□□ 0.4
RNF40O75150 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RNF40O75150 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.58■□□□□ 0.4
RNF40O75150 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.58■□□□□ 0.4
RNF40O75150 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.58■□□□□ 0.4
RNF40O75150 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RNF40O75150 ME2P1-201ENST00000426028 1970 ntBASIC17.58■□□□□ 0.4
RNF40O75150 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RNF40O75150 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RNF40O75150 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.58■□□□□ 0.4
RNF40O75150 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.58■□□□□ 0.4
RNF40O75150 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.58■□□□□ 0.4
RNF40O75150 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
RNF40O75150 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
RNF40O75150 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.58■□□□□ 0.4
RNF40O75150 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RNF40O75150 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.57■□□□□ 0.4
RNF40O75150 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
RNF40O75150 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.57■□□□□ 0.4
RNF40O75150 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.57■□□□□ 0.4
RNF40O75150 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 AL139400.1-201ENST00000366220 510 ntBASIC17.57■□□□□ 0.4
RNF40O75150 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.57■□□□□ 0.4
RNF40O75150 FAM8A3P-201ENST00000427218 844 ntBASIC17.57■□□□□ 0.4
RNF40O75150 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.57■□□□□ 0.4
RNF40O75150 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.57■□□□□ 0.4
RNF40O75150 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.57■□□□□ 0.4
RNF40O75150 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.57■□□□□ 0.4
RNF40O75150 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.57■□□□□ 0.4
RNF40O75150 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.57■□□□□ 0.4
RNF40O75150 AC092364.2-202ENST00000597012 1073 ntBASIC17.57■□□□□ 0.4
RNF40O75150 AC068137.2-201ENST00000605408 478 ntBASIC17.57■□□□□ 0.4
RNF40O75150 AC092902.6-201ENST00000641783 218 ntBASIC17.57■□□□□ 0.4
RNF40O75150 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.57■□□□□ 0.4
RNF40O75150 AC022532.1-201ENST00000624563 1728 ntBASIC17.57■□□□□ 0.4
RNF40O75150 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.57■□□□□ 0.4
RNF40O75150 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
RNF40O75150 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
RNF40O75150 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.57■□□□□ 0.4
RNF40O75150 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF40O75150 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
RNF40O75150 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.56■□□□□ 0.4
RNF40O75150 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 AL590787.1-201ENST00000568856 1315 ntBASIC17.56■□□□□ 0.4
RNF40O75150 AC010491.1-201ENST00000563101 2797 ntBASIC17.56■□□□□ 0.4
RNF40O75150 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 ACTG1P4-201ENST00000425123 1122 ntBASIC17.56■□□□□ 0.4
RNF40O75150 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF40O75150 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.56■□□□□ 0.4
RNF40O75150 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.56■□□□□ 0.4
RNF40O75150 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.56■□□□□ 0.4
RNF40O75150 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF40O75150 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF40O75150 AC011467.4-201ENST00000594891 528 ntBASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms