Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 RNPS1P1-201ENST00000507437 918 ntBASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 AC105339.3-201ENST00000560043 636 ntBASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM49D1C9J1S8 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 MIR3909-201ENST00000579518 119 ntBASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 AC005593.1-201ENST00000624894 515 ntBASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM49D1C9J1S8 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.27■□□□□ 0.19
TRIM49D1C9J1S8 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
TRIM49D1C9J1S8 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM49D1C9J1S8 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM49D1C9J1S8 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM49D1C9J1S8 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM49D1C9J1S8 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM49D1C9J1S8 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM49D1C9J1S8 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM49D1C9J1S8 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 TMBIM7P-203ENST00000641617 1718 ntBASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms