Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.63■■□□□ 1.37
PCDHB1Q9Y5F3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHB1Q9Y5F3 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
PCDHB1Q9Y5F3 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHB1Q9Y5F3 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
PCDHB1Q9Y5F3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHB1Q9Y5F3 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHB1Q9Y5F3 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHB1Q9Y5F3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.62■■□□□ 1.37
PCDHB1Q9Y5F3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHB1Q9Y5F3 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.62■■□□□ 1.37
PCDHB1Q9Y5F3 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23.61■■□□□ 1.37
PCDHB1Q9Y5F3 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHB1Q9Y5F3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHB1Q9Y5F3 IDNK-203ENST00000405990 629 ntTSL 2 BASIC23.61■■□□□ 1.37
PCDHB1Q9Y5F3 AC103724.3-201ENST00000564481 992 ntBASIC23.61■■□□□ 1.37
PCDHB1Q9Y5F3 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHB1Q9Y5F3 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
PCDHB1Q9Y5F3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.6■■□□□ 1.37
PCDHB1Q9Y5F3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHB1Q9Y5F3 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.6■■□□□ 1.37
PCDHB1Q9Y5F3 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHB1Q9Y5F3 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC23.6■■□□□ 1.37
PCDHB1Q9Y5F3 IDNK-201ENST00000376417 511 ntTSL 5 BASIC23.6■■□□□ 1.37
PCDHB1Q9Y5F3 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHB1Q9Y5F3 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHB1Q9Y5F3 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.6■■□□□ 1.37
PCDHB1Q9Y5F3 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHB1Q9Y5F3 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC23.59■■□□□ 1.37
PCDHB1Q9Y5F3 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHB1Q9Y5F3 AL031848.2-201ENST00000607670 837 ntBASIC23.59■■□□□ 1.37
PCDHB1Q9Y5F3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHB1Q9Y5F3 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHB1Q9Y5F3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHB1Q9Y5F3 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHB1Q9Y5F3 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHB1Q9Y5F3 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHB1Q9Y5F3 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
PCDHB1Q9Y5F3 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.58■■□□□ 1.37
PCDHB1Q9Y5F3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.57■■□□□ 1.36
PCDHB1Q9Y5F3 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHB1Q9Y5F3 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC23.57■■□□□ 1.36
PCDHB1Q9Y5F3 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
PCDHB1Q9Y5F3 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHB1Q9Y5F3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.56■■□□□ 1.36
PCDHB1Q9Y5F3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHB1Q9Y5F3 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
PCDHB1Q9Y5F3 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHB1Q9Y5F3 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHB1Q9Y5F3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHB1Q9Y5F3 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHB1Q9Y5F3 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHB1Q9Y5F3 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHB1Q9Y5F3 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHB1Q9Y5F3 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHB1Q9Y5F3 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHB1Q9Y5F3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.54■■□□□ 1.36
PCDHB1Q9Y5F3 AL356441.2-201ENST00000443009 864 ntBASIC23.54■■□□□ 1.36
PCDHB1Q9Y5F3 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHB1Q9Y5F3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.53■■□□□ 1.36
PCDHB1Q9Y5F3 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
PCDHB1Q9Y5F3 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.53■■□□□ 1.36
PCDHB1Q9Y5F3 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
PCDHB1Q9Y5F3 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
PCDHB1Q9Y5F3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHB1Q9Y5F3 AC142381.3-201ENST00000568208 1670 ntBASIC23.53■■□□□ 1.36
PCDHB1Q9Y5F3 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHB1Q9Y5F3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
PCDHB1Q9Y5F3 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.52■■□□□ 1.36
PCDHB1Q9Y5F3 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
PCDHB1Q9Y5F3 MTX2-204ENST00000443241 799 ntTSL 3 BASIC23.52■■□□□ 1.36
PCDHB1Q9Y5F3 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
PCDHB1Q9Y5F3 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHB1Q9Y5F3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHB1Q9Y5F3 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 AC022211.4-201ENST00000625094 2161 ntBASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.51■■□□□ 1.35
PCDHB1Q9Y5F3 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.5■■□□□ 1.35
PCDHB1Q9Y5F3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHB1Q9Y5F3 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC23.5■■□□□ 1.35
PCDHB1Q9Y5F3 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.5■■□□□ 1.35
PCDHB1Q9Y5F3 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.5■■□□□ 1.35
PCDHB1Q9Y5F3 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHB1Q9Y5F3 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHB1Q9Y5F3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHB1Q9Y5F3 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHB1Q9Y5F3 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHB1Q9Y5F3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHB1Q9Y5F3 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHB1Q9Y5F3 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHB1Q9Y5F3 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms