Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
SHANK3Q9BYB0 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
SHANK3Q9BYB0 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SHANK3Q9BYB0 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC31.18■■■□□ 2.58
SHANK3Q9BYB0 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SHANK3Q9BYB0 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
SHANK3Q9BYB0 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
SHANK3Q9BYB0 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SHANK3Q9BYB0 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHANK3Q9BYB0 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
SHANK3Q9BYB0 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
SHANK3Q9BYB0 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
SHANK3Q9BYB0 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHANK3Q9BYB0 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHANK3Q9BYB0 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
SHANK3Q9BYB0 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHANK3Q9BYB0 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
SHANK3Q9BYB0 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC31.16■■■□□ 2.58
SHANK3Q9BYB0 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC31.16■■■□□ 2.58
SHANK3Q9BYB0 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC31.16■■■□□ 2.58
SHANK3Q9BYB0 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHANK3Q9BYB0 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHANK3Q9BYB0 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
SHANK3Q9BYB0 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
SHANK3Q9BYB0 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHANK3Q9BYB0 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
SHANK3Q9BYB0 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHANK3Q9BYB0 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
SHANK3Q9BYB0 TFPT-201ENST00000391757 774 ntTSL 5 BASIC31.15■■■□□ 2.58
SHANK3Q9BYB0 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHANK3Q9BYB0 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHANK3Q9BYB0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SHANK3Q9BYB0 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SHANK3Q9BYB0 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC31.14■■■□□ 2.58
SHANK3Q9BYB0 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SHANK3Q9BYB0 AK3-203ENST00000447596 705 ntTSL 2 BASIC31.13■■■□□ 2.57
SHANK3Q9BYB0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC31.13■■■□□ 2.57
SHANK3Q9BYB0 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC31.13■■■□□ 2.57
SHANK3Q9BYB0 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC31.13■■■□□ 2.57
SHANK3Q9BYB0 CLTA-210ENST00000540080 989 ntTSL 2 BASIC31.13■■■□□ 2.57
SHANK3Q9BYB0 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC31.13■■■□□ 2.57
SHANK3Q9BYB0 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC31.13■■■□□ 2.57
SHANK3Q9BYB0 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SHANK3Q9BYB0 RARRES2P6-201ENST00000567333 442 ntBASIC31.12■■■□□ 2.57
SHANK3Q9BYB0 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SHANK3Q9BYB0 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC31.12■■■□□ 2.57
SHANK3Q9BYB0 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC31.12■■■□□ 2.57
SHANK3Q9BYB0 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
SHANK3Q9BYB0 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC31.11■■■□□ 2.57
SHANK3Q9BYB0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
SHANK3Q9BYB0 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC31.11■■■□□ 2.57
SHANK3Q9BYB0 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SHANK3Q9BYB0 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC31.11■■■□□ 2.57
SHANK3Q9BYB0 CLTA-206ENST00000466396 695 ntTSL 2 BASIC31.11■■■□□ 2.57
SHANK3Q9BYB0 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC31.11■■■□□ 2.57
SHANK3Q9BYB0 AL356740.2-201ENST00000601559 647 ntBASIC31.1■■■□□ 2.57
SHANK3Q9BYB0 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SHANK3Q9BYB0 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC31.1■■■□□ 2.57
SHANK3Q9BYB0 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SHANK3Q9BYB0 GUK1-205ENST00000366722 850 ntTSL 3 BASIC31.09■■■□□ 2.57
SHANK3Q9BYB0 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC31.09■■■□□ 2.57
SHANK3Q9BYB0 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC31.09■■■□□ 2.57
SHANK3Q9BYB0 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC31.08■■■□□ 2.57
SHANK3Q9BYB0 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SHANK3Q9BYB0 AC092666.2-201ENST00000613287 246 ntBASIC31.08■■■□□ 2.57
SHANK3Q9BYB0 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SHANK3Q9BYB0 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.57
SHANK3Q9BYB0 ZNRF2P3-201ENST00000424200 374 ntBASIC31.07■■■□□ 2.56
SHANK3Q9BYB0 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC31.07■■■□□ 2.56
SHANK3Q9BYB0 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC31.07■■■□□ 2.56
SHANK3Q9BYB0 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SHANK3Q9BYB0 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC31.07■■■□□ 2.56
SHANK3Q9BYB0 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
SHANK3Q9BYB0 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SHANK3Q9BYB0 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
SHANK3Q9BYB0 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SHANK3Q9BYB0 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
SHANK3Q9BYB0 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
SHANK3Q9BYB0 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SHANK3Q9BYB0 AL031432.3-201ENST00000607698 485 ntBASIC31.05■■■□□ 2.56
SHANK3Q9BYB0 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SHANK3Q9BYB0 SHF-208ENST00000560734 1731 ntTSL 3 BASIC31.05■■■□□ 2.56
SHANK3Q9BYB0 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC31.04■■■□□ 2.56
SHANK3Q9BYB0 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC31.04■■■□□ 2.56
SHANK3Q9BYB0 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
SHANK3Q9BYB0 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
SHANK3Q9BYB0 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SHANK3Q9BYB0 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC31.04■■■□□ 2.56
SHANK3Q9BYB0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC31.04■■■□□ 2.56
SHANK3Q9BYB0 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC31.04■■■□□ 2.56
SHANK3Q9BYB0 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHANK3Q9BYB0 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHANK3Q9BYB0 SUDS3P1-201ENST00000505831 966 ntBASIC31.03■■■□□ 2.56
SHANK3Q9BYB0 AC133561.4-201ENST00000566112 224 ntBASIC31.03■■■□□ 2.56
SHANK3Q9BYB0 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
SHANK3Q9BYB0 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
SHANK3Q9BYB0 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC31.02■■■□□ 2.56
SHANK3Q9BYB0 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
SHANK3Q9BYB0 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC31.01■■■□□ 2.56
SHANK3Q9BYB0 SSSCA1-AS1-201ENST00000567594 614 ntBASIC31.01■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms