Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CDX2Q99626 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CDX2Q99626 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
CDX2Q99626 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CDX2Q99626 IRS3P-201ENST00000223076 1006 ntBASIC25.34■■□□□ 1.65
CDX2Q99626 JTB-203ENST00000368589 1216 ntTSL 2 BASIC25.34■■□□□ 1.65
CDX2Q99626 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
CDX2Q99626 RASA4CP-201ENST00000424092 1398 ntBASIC25.33■■□□□ 1.65
CDX2Q99626 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
CDX2Q99626 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.33■■□□□ 1.65
CDX2Q99626 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CDX2Q99626 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC25.32■■□□□ 1.64
CDX2Q99626 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
CDX2Q99626 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
CDX2Q99626 AF131216.4-201ENST00000638924 1588 ntBASIC25.31■■□□□ 1.64
CDX2Q99626 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC25.31■■□□□ 1.64
CDX2Q99626 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.31■■□□□ 1.64
CDX2Q99626 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC25.31■■□□□ 1.64
CDX2Q99626 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC25.31■■□□□ 1.64
CDX2Q99626 ST7-AS1-201ENST00000456775 1889 ntBASIC25.31■■□□□ 1.64
CDX2Q99626 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
CDX2Q99626 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
CDX2Q99626 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
CDX2Q99626 ESRRAP2-201ENST00000418437 1549 ntBASIC25.3■■□□□ 1.64
CDX2Q99626 GATM-206ENST00000558336 1522 ntTSL 2 BASIC25.3■■□□□ 1.64
CDX2Q99626 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
CDX2Q99626 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
CDX2Q99626 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CDX2Q99626 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC25.29■■□□□ 1.64
CDX2Q99626 DUX4L19-201ENST00000557448 1267 ntBASIC25.29■■□□□ 1.64
CDX2Q99626 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC25.29■■□□□ 1.64
CDX2Q99626 AC092437.1-201ENST00000624794 1048 ntBASIC25.29■■□□□ 1.64
CDX2Q99626 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
CDX2Q99626 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CDX2Q99626 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
CDX2Q99626 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CDX2Q99626 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CDX2Q99626 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
CDX2Q99626 MIR4767-201ENST00000582827 78 ntBASIC25.28■■□□□ 1.64
CDX2Q99626 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.28■■□□□ 1.64
CDX2Q99626 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.28■■□□□ 1.64
CDX2Q99626 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC25.27■■□□□ 1.64
CDX2Q99626 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC25.27■■□□□ 1.64
CDX2Q99626 MIR6722-201ENST00000617286 78 ntBASIC25.27■■□□□ 1.64
CDX2Q99626 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.27■■□□□ 1.64
CDX2Q99626 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CDX2Q99626 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CDX2Q99626 AC034268.1-201ENST00000441047 882 ntBASIC25.26■■□□□ 1.63
CDX2Q99626 SLC47A1P1-202ENST00000449666 945 ntBASIC25.26■■□□□ 1.63
CDX2Q99626 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC25.26■■□□□ 1.63
CDX2Q99626 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CDX2Q99626 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
CDX2Q99626 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CDX2Q99626 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.25■■□□□ 1.63
CDX2Q99626 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CDX2Q99626 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CDX2Q99626 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CDX2Q99626 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC25.25■■□□□ 1.63
CDX2Q99626 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CDX2Q99626 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
CDX2Q99626 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC25.24■■□□□ 1.63
CDX2Q99626 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
CDX2Q99626 SP2-202ENST00000613139 908 ntTSL 5 BASIC25.24■■□□□ 1.63
CDX2Q99626 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CDX2Q99626 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
CDX2Q99626 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC25.23■■□□□ 1.63
CDX2Q99626 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
CDX2Q99626 RHOF-204ENST00000537265 699 ntTSL 2 BASIC25.23■■□□□ 1.63
CDX2Q99626 KRT18P5-201ENST00000436075 1291 ntBASIC25.22■■□□□ 1.63
CDX2Q99626 AC027682.1-201ENST00000562846 899 ntBASIC25.22■■□□□ 1.63
CDX2Q99626 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
CDX2Q99626 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC25.21■■□□□ 1.63
CDX2Q99626 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CDX2Q99626 AC004911.1-201ENST00000416316 871 ntBASIC25.21■■□□□ 1.63
CDX2Q99626 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CDX2Q99626 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CDX2Q99626 SNX5-217ENST00000606557 1087 ntBASIC25.21■■□□□ 1.63
CDX2Q99626 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CDX2Q99626 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC25.2■■□□□ 1.63
CDX2Q99626 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CDX2Q99626 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CDX2Q99626 SYT6-210ENST00000641643 1587 ntBASIC25.2■■□□□ 1.62
CDX2Q99626 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CDX2Q99626 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
CDX2Q99626 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.2■■□□□ 1.62
CDX2Q99626 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC25.2■■□□□ 1.62
CDX2Q99626 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC25.2■■□□□ 1.62
CDX2Q99626 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC25.2■■□□□ 1.62
CDX2Q99626 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CDX2Q99626 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
CDX2Q99626 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CDX2Q99626 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
CDX2Q99626 DLX3-202ENST00000512495 834 ntTSL 2 BASIC25.19■■□□□ 1.62
CDX2Q99626 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC25.19■■□□□ 1.62
CDX2Q99626 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CDX2Q99626 HACD1-201ENST00000326961 773 ntTSL 2 BASIC25.18■■□□□ 1.62
CDX2Q99626 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC25.18■■□□□ 1.62
CDX2Q99626 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC25.18■■□□□ 1.62
CDX2Q99626 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC25.18■■□□□ 1.62
CDX2Q99626 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC25.18■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms