Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 DUSP8P3-201ENST00000399571 1760 ntBASIC18.85■□□□□ 0.61
CLRN3Q8NCR9 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CLRN3Q8NCR9 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLRN3Q8NCR9 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
CLRN3Q8NCR9 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
CLRN3Q8NCR9 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
CLRN3Q8NCR9 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLRN3Q8NCR9 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.83■□□□□ 0.6
CLRN3Q8NCR9 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN3Q8NCR9 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN3Q8NCR9 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN3Q8NCR9 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN3Q8NCR9 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 WASH5P-204ENST00000632292 975 ntBASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 AC127496.7-201ENST00000625110 1798 ntBASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 AC142472.1-201ENST00000612013 1741 ntBASIC18.82■□□□□ 0.6
CLRN3Q8NCR9 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN3Q8NCR9 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN3Q8NCR9 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN3Q8NCR9 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.81■□□□□ 0.6
CLRN3Q8NCR9 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC18.81■□□□□ 0.6
CLRN3Q8NCR9 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CLRN3Q8NCR9 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CLRN3Q8NCR9 AL137060.1-201ENST00000618151 2648 ntBASIC18.81■□□□□ 0.6
CLRN3Q8NCR9 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN3Q8NCR9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN3Q8NCR9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CLRN3Q8NCR9 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN3Q8NCR9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN3Q8NCR9 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN3Q8NCR9 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN3Q8NCR9 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN3Q8NCR9 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN3Q8NCR9 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN3Q8NCR9 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN3Q8NCR9 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC18.8■□□□□ 0.6
CLRN3Q8NCR9 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN3Q8NCR9 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN3Q8NCR9 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 AP003733.4-201ENST00000623785 1697 ntBASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN3Q8NCR9 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CLRN3Q8NCR9 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN3Q8NCR9 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CLRN3Q8NCR9 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN3Q8NCR9 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.77■□□□□ 0.6
CLRN3Q8NCR9 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN3Q8NCR9 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN3Q8NCR9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN3Q8NCR9 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN3Q8NCR9 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
CLRN3Q8NCR9 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CLRN3Q8NCR9 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CLRN3Q8NCR9 FOXO3B-201ENST00000395675 1928 ntBASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms