Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC28.97■■■□□ 2.23
USP48Q86UV5 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
USP48Q86UV5 RPP21-222ENST00000433076 577 ntTSL 2 BASIC28.97■■■□□ 2.23
USP48Q86UV5 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC28.97■■■□□ 2.23
USP48Q86UV5 AC021242.3-201ENST00000607598 1377 ntBASIC28.97■■■□□ 2.23
USP48Q86UV5 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
USP48Q86UV5 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
USP48Q86UV5 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC28.96■■■□□ 2.23
USP48Q86UV5 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC28.95■■■□□ 2.23
USP48Q86UV5 AL136116.3-201ENST00000402907 1138 ntBASIC28.95■■■□□ 2.22
USP48Q86UV5 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC28.95■■■□□ 2.22
USP48Q86UV5 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC28.95■■■□□ 2.22
USP48Q86UV5 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC28.95■■■□□ 2.22
USP48Q86UV5 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
USP48Q86UV5 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC28.94■■■□□ 2.22
USP48Q86UV5 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
USP48Q86UV5 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
USP48Q86UV5 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
USP48Q86UV5 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC28.94■■■□□ 2.22
USP48Q86UV5 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC28.94■■■□□ 2.22
USP48Q86UV5 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC28.93■■■□□ 2.22
USP48Q86UV5 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC28.93■■■□□ 2.22
USP48Q86UV5 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
USP48Q86UV5 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
USP48Q86UV5 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC28.92■■■□□ 2.22
USP48Q86UV5 AC092028.1-203ENST00000608262 953 ntBASIC28.92■■■□□ 2.22
USP48Q86UV5 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC28.91■■■□□ 2.22
USP48Q86UV5 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC28.91■■■□□ 2.22
USP48Q86UV5 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC28.91■■■□□ 2.22
USP48Q86UV5 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC28.91■■■□□ 2.22
USP48Q86UV5 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC28.91■■■□□ 2.22
USP48Q86UV5 AC110285.6-201ENST00000617652 491 ntBASIC28.91■■■□□ 2.22
USP48Q86UV5 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC28.91■■■□□ 2.22
USP48Q86UV5 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
USP48Q86UV5 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC28.9■■■□□ 2.22
USP48Q86UV5 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC28.9■■■□□ 2.22
USP48Q86UV5 AC120024.1-201ENST00000562672 995 ntBASIC28.9■■■□□ 2.22
USP48Q86UV5 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC28.9■■■□□ 2.22
USP48Q86UV5 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC28.9■■■□□ 2.22
USP48Q86UV5 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
USP48Q86UV5 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
USP48Q86UV5 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC28.89■■■□□ 2.22
USP48Q86UV5 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC28.89■■■□□ 2.22
USP48Q86UV5 AC005837.3-201ENST00000612163 286 ntBASIC28.89■■■□□ 2.22
USP48Q86UV5 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC28.89■■■□□ 2.22
USP48Q86UV5 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC28.88■■■□□ 2.21
USP48Q86UV5 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
USP48Q86UV5 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.21
USP48Q86UV5 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
USP48Q86UV5 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC28.87■■■□□ 2.21
USP48Q86UV5 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
USP48Q86UV5 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
USP48Q86UV5 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
USP48Q86UV5 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC28.86■■■□□ 2.21
USP48Q86UV5 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
USP48Q86UV5 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC28.86■■■□□ 2.21
USP48Q86UV5 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
USP48Q86UV5 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
USP48Q86UV5 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
USP48Q86UV5 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC28.85■■■□□ 2.21
USP48Q86UV5 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
USP48Q86UV5 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC28.85■■■□□ 2.21
USP48Q86UV5 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC28.85■■■□□ 2.21
USP48Q86UV5 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC28.85■■■□□ 2.21
USP48Q86UV5 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
USP48Q86UV5 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC28.84■■■□□ 2.21
USP48Q86UV5 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
USP48Q86UV5 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
USP48Q86UV5 KRT18P10-201ENST00000388836 1287 ntBASIC28.84■■■□□ 2.21
USP48Q86UV5 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
USP48Q86UV5 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC28.84■■■□□ 2.21
USP48Q86UV5 AC145676.1-201ENST00000514988 2004 ntBASIC28.84■■■□□ 2.21
USP48Q86UV5 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
USP48Q86UV5 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
USP48Q86UV5 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
USP48Q86UV5 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
USP48Q86UV5 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC28.83■■■□□ 2.21
USP48Q86UV5 AL117332.1-201ENST00000622628 974 ntBASIC28.83■■■□□ 2.21
USP48Q86UV5 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
USP48Q86UV5 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
USP48Q86UV5 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
USP48Q86UV5 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC28.82■■■□□ 2.2
USP48Q86UV5 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC28.82■■■□□ 2.2
USP48Q86UV5 AC096631.2-201ENST00000436136 790 ntBASIC28.82■■■□□ 2.2
USP48Q86UV5 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
USP48Q86UV5 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC28.82■■■□□ 2.2
USP48Q86UV5 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC28.82■■■□□ 2.2
USP48Q86UV5 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
USP48Q86UV5 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
USP48Q86UV5 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
USP48Q86UV5 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
USP48Q86UV5 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
USP48Q86UV5 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC28.81■■■□□ 2.2
USP48Q86UV5 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC28.81■■■□□ 2.2
USP48Q86UV5 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC28.81■■■□□ 2.2
USP48Q86UV5 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
USP48Q86UV5 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC28.8■■■□□ 2.2
USP48Q86UV5 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
USP48Q86UV5 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC28.8■■■□□ 2.2
USP48Q86UV5 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC28.8■■■□□ 2.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms