Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.28■■□□□ 1.64
DDX53Q86TM3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
DDX53Q86TM3 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
DDX53Q86TM3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.27■■□□□ 1.64
DDX53Q86TM3 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.27■■□□□ 1.64
DDX53Q86TM3 MIR3621-201ENST00000580529 85 ntBASIC25.27■■□□□ 1.64
DDX53Q86TM3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.27■■□□□ 1.64
DDX53Q86TM3 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
DDX53Q86TM3 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
DDX53Q86TM3 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.26■■□□□ 1.63
DDX53Q86TM3 MIR638-201ENST00000385237 100 ntBASIC25.26■■□□□ 1.63
DDX53Q86TM3 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC25.26■■□□□ 1.63
DDX53Q86TM3 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.26■■□□□ 1.63
DDX53Q86TM3 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.26■■□□□ 1.63
DDX53Q86TM3 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC25.26■■□□□ 1.63
DDX53Q86TM3 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
DDX53Q86TM3 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
DDX53Q86TM3 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
DDX53Q86TM3 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
DDX53Q86TM3 AL139246.5-201ENST00000606645 996 ntBASIC25.25■■□□□ 1.63
DDX53Q86TM3 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.25■■□□□ 1.63
DDX53Q86TM3 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
DDX53Q86TM3 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
DDX53Q86TM3 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
DDX53Q86TM3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
DDX53Q86TM3 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
DDX53Q86TM3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
DDX53Q86TM3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
DDX53Q86TM3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
DDX53Q86TM3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.24■■□□□ 1.63
DDX53Q86TM3 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
DDX53Q86TM3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25.23■■□□□ 1.63
DDX53Q86TM3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
DDX53Q86TM3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
DDX53Q86TM3 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC25.23■■□□□ 1.63
DDX53Q86TM3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
DDX53Q86TM3 AL136116.3-201ENST00000402907 1138 ntBASIC25.23■■□□□ 1.63
DDX53Q86TM3 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.23■■□□□ 1.63
DDX53Q86TM3 AL356740.2-201ENST00000601559 647 ntBASIC25.23■■□□□ 1.63
DDX53Q86TM3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.23■■□□□ 1.63
DDX53Q86TM3 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
DDX53Q86TM3 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.22■■□□□ 1.63
DDX53Q86TM3 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
DDX53Q86TM3 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
DDX53Q86TM3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.22■■□□□ 1.63
DDX53Q86TM3 NALT1-201ENST00000429224 738 ntTSL 5 BASIC25.22■■□□□ 1.63
DDX53Q86TM3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.22■■□□□ 1.63
DDX53Q86TM3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC25.22■■□□□ 1.63
DDX53Q86TM3 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
DDX53Q86TM3 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC25.22■■□□□ 1.63
DDX53Q86TM3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
DDX53Q86TM3 AF131216.4-201ENST00000638924 1588 ntBASIC25.22■■□□□ 1.63
DDX53Q86TM3 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
DDX53Q86TM3 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.21■■□□□ 1.63
DDX53Q86TM3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25.21■■□□□ 1.63
DDX53Q86TM3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
DDX53Q86TM3 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
DDX53Q86TM3 FOXO3B-201ENST00000395675 1928 ntBASIC25.21■■□□□ 1.63
DDX53Q86TM3 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
DDX53Q86TM3 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
DDX53Q86TM3 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
DDX53Q86TM3 MIR935-201ENST00000401179 91 ntBASIC25.2■■□□□ 1.62
DDX53Q86TM3 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.62
DDX53Q86TM3 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC25.2■■□□□ 1.62
DDX53Q86TM3 CLTA-210ENST00000540080 989 ntTSL 2 BASIC25.2■■□□□ 1.62
DDX53Q86TM3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
DDX53Q86TM3 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
DDX53Q86TM3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
DDX53Q86TM3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.19■■□□□ 1.62
DDX53Q86TM3 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.19■■□□□ 1.62
DDX53Q86TM3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
DDX53Q86TM3 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.19■■□□□ 1.62
DDX53Q86TM3 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.19■■□□□ 1.62
DDX53Q86TM3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
DDX53Q86TM3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
DDX53Q86TM3 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
DDX53Q86TM3 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
DDX53Q86TM3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
DDX53Q86TM3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
DDX53Q86TM3 RALB-208ENST00000631312 311 ntTSL 5 BASIC25.18■■□□□ 1.62
DDX53Q86TM3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC25.18■■□□□ 1.62
DDX53Q86TM3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
DDX53Q86TM3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
DDX53Q86TM3 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.18■■□□□ 1.62
DDX53Q86TM3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
DDX53Q86TM3 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
DDX53Q86TM3 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC25.17■■□□□ 1.62
DDX53Q86TM3 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
DDX53Q86TM3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
DDX53Q86TM3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
DDX53Q86TM3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
DDX53Q86TM3 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
DDX53Q86TM3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC25.16■■□□□ 1.62
DDX53Q86TM3 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
DDX53Q86TM3 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
DDX53Q86TM3 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.15■■□□□ 1.62
DDX53Q86TM3 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
DDX53Q86TM3 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
DDX53Q86TM3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
DDX53Q86TM3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms