Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CDH12P55289 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CDH12P55289 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.9■■□□□ 1.1
CDH12P55289 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CDH12P55289 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CDH12P55289 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CDH12P55289 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CDH12P55289 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CDH12P55289 MIR3960-201ENST00000583311 91 ntBASIC21.89■■□□□ 1.09
CDH12P55289 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CDH12P55289 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CDH12P55289 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.89■■□□□ 1.09
CDH12P55289 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CDH12P55289 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.88■■□□□ 1.09
CDH12P55289 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.88■■□□□ 1.09
CDH12P55289 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH12P55289 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH12P55289 AC022413.1-201ENST00000624602 984 ntBASIC21.88■■□□□ 1.09
CDH12P55289 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH12P55289 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH12P55289 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH12P55289 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH12P55289 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CDH12P55289 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.87■■□□□ 1.09
CDH12P55289 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH12P55289 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CDH12P55289 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
CDH12P55289 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CDH12P55289 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.87■■□□□ 1.09
CDH12P55289 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CDH12P55289 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.86■■□□□ 1.09
CDH12P55289 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CDH12P55289 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH12P55289 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.85■■□□□ 1.09
CDH12P55289 LINC00543-201ENST00000567234 1845 ntBASIC21.85■■□□□ 1.09
CDH12P55289 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH12P55289 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH12P55289 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH12P55289 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CDH12P55289 ECEL1P2-201ENST00000461596 1295 ntBASIC21.85■■□□□ 1.09
CDH12P55289 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH12P55289 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
CDH12P55289 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CDH12P55289 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDH12P55289 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDH12P55289 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDH12P55289 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CDH12P55289 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CDH12P55289 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.84■■□□□ 1.09
CDH12P55289 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
CDH12P55289 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.83■■□□□ 1.09
CDH12P55289 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.83■■□□□ 1.09
CDH12P55289 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
CDH12P55289 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.83■■□□□ 1.09
CDH12P55289 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH12P55289 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.83■■□□□ 1.08
CDH12P55289 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CDH12P55289 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
CDH12P55289 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH12P55289 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CDH12P55289 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CDH12P55289 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH12P55289 MIR4449-201ENST00000578365 66 ntBASIC21.82■■□□□ 1.08
CDH12P55289 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.82■■□□□ 1.08
CDH12P55289 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
CDH12P55289 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.82■■□□□ 1.08
CDH12P55289 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CDH12P55289 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH12P55289 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CDH12P55289 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.81■■□□□ 1.08
CDH12P55289 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH12P55289 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CDH12P55289 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH12P55289 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CDH12P55289 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH12P55289 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CDH12P55289 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CDH12P55289 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.8■■□□□ 1.08
CDH12P55289 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CDH12P55289 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CDH12P55289 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDH12P55289 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CDH12P55289 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDH12P55289 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CDH12P55289 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDH12P55289 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.79■■□□□ 1.08
CDH12P55289 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CDH12P55289 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
CDH12P55289 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.79■■□□□ 1.08
CDH12P55289 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDH12P55289 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.79■■□□□ 1.08
CDH12P55289 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDH12P55289 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.79■■□□□ 1.08
CDH12P55289 AC133561.1-201ENST00000568600 2415 ntBASIC21.79■■□□□ 1.08
CDH12P55289 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDH12P55289 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDH12P55289 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDH12P55289 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CDH12P55289 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CDH12P55289 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 168.3 ms