Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SCN1AP35498 AC145676.1-201ENST00000514988 2004 ntBASIC25.39■■□□□ 1.65
SCN1AP35498 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC25.39■■□□□ 1.65
SCN1AP35498 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SCN1AP35498 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
SCN1AP35498 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SCN1AP35498 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
SCN1AP35498 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SCN1AP35498 TRIR-205ENST00000592273 783 ntTSL 3 BASIC25.37■■□□□ 1.65
SCN1AP35498 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.37■■□□□ 1.65
SCN1AP35498 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SCN1AP35498 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SCN1AP35498 AL031848.2-201ENST00000607670 837 ntBASIC25.37■■□□□ 1.65
SCN1AP35498 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SCN1AP35498 KRT18P24-201ENST00000344739 1156 ntBASIC25.36■■□□□ 1.65
SCN1AP35498 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SCN1AP35498 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.35■■□□□ 1.65
SCN1AP35498 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SCN1AP35498 FOXO3B-201ENST00000395675 1928 ntBASIC25.35■■□□□ 1.65
SCN1AP35498 AL592295.1-201ENST00000400984 884 ntBASIC25.34■■□□□ 1.65
SCN1AP35498 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SCN1AP35498 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
SCN1AP35498 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC25.34■■□□□ 1.65
SCN1AP35498 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC25.34■■□□□ 1.65
SCN1AP35498 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SCN1AP35498 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
SCN1AP35498 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.34■■□□□ 1.65
SCN1AP35498 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
SCN1AP35498 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
SCN1AP35498 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SCN1AP35498 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
SCN1AP35498 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.64
SCN1AP35498 AC120024.1-201ENST00000562672 995 ntBASIC25.32■■□□□ 1.64
SCN1AP35498 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC25.32■■□□□ 1.64
SCN1AP35498 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
SCN1AP35498 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.32■■□□□ 1.64
SCN1AP35498 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SCN1AP35498 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
SCN1AP35498 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
SCN1AP35498 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SCN1AP35498 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC25.32■■□□□ 1.64
SCN1AP35498 CEBPA-AS1-201ENST00000592982 2198 ntBASIC25.32■■□□□ 1.64
SCN1AP35498 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SCN1AP35498 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SCN1AP35498 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SCN1AP35498 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
SCN1AP35498 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC25.31■■□□□ 1.64
SCN1AP35498 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC25.31■■□□□ 1.64
SCN1AP35498 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SCN1AP35498 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC25.3■■□□□ 1.64
SCN1AP35498 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.3■■□□□ 1.64
SCN1AP35498 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SCN1AP35498 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SCN1AP35498 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC25.3■■□□□ 1.64
SCN1AP35498 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC25.3■■□□□ 1.64
SCN1AP35498 AC011551.1-201ENST00000614101 683 ntBASIC25.29■■□□□ 1.64
SCN1AP35498 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
SCN1AP35498 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SCN1AP35498 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SCN1AP35498 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.29■■□□□ 1.64
SCN1AP35498 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC25.29■■□□□ 1.64
SCN1AP35498 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SCN1AP35498 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
SCN1AP35498 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SCN1AP35498 HES6-204ENST00000409182 863 ntTSL 2 BASIC25.28■■□□□ 1.64
SCN1AP35498 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC25.28■■□□□ 1.64
SCN1AP35498 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SCN1AP35498 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SCN1AP35498 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SCN1AP35498 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SCN1AP35498 Z92544.1-202ENST00000571933 1220 ntBASIC25.27■■□□□ 1.64
SCN1AP35498 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SCN1AP35498 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SCN1AP35498 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SCN1AP35498 SLC6A10P-202ENST00000431994 2058 ntBASIC25.27■■□□□ 1.64
SCN1AP35498 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SCN1AP35498 GUSBP5-201ENST00000418136 578 ntBASIC25.27■■□□□ 1.64
SCN1AP35498 RNF146-205ENST00000477776 762 ntTSL 3 BASIC25.27■■□□□ 1.64
SCN1AP35498 THA1P-201ENST00000590384 1145 ntBASIC25.27■■□□□ 1.64
SCN1AP35498 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
SCN1AP35498 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC25.26■■□□□ 1.63
SCN1AP35498 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SCN1AP35498 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC25.25■■□□□ 1.63
SCN1AP35498 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SCN1AP35498 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC25.25■■□□□ 1.63
SCN1AP35498 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SCN1AP35498 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SCN1AP35498 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
SCN1AP35498 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
SCN1AP35498 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SCN1AP35498 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SCN1AP35498 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SCN1AP35498 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SCN1AP35498 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SCN1AP35498 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SCN1AP35498 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SCN1AP35498 SENP5-202ENST00000419026 973 ntTSL 3 BASIC25.23■■□□□ 1.63
SCN1AP35498 BX664725.1-201ENST00000438252 379 ntBASIC25.23■■□□□ 1.63
SCN1AP35498 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC25.22■■□□□ 1.63
SCN1AP35498 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC25.22■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms