Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL5A3P25940 AL356740.2-201ENST00000601559 647 ntBASIC30.4■■■□□ 2.46
COL5A3P25940 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL5A3P25940 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC30.4■■■□□ 2.46
COL5A3P25940 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.4■■■□□ 2.46
COL5A3P25940 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL5A3P25940 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC30.39■■■□□ 2.46
COL5A3P25940 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC30.39■■■□□ 2.46
COL5A3P25940 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL5A3P25940 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC30.39■■■□□ 2.46
COL5A3P25940 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
COL5A3P25940 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
COL5A3P25940 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
COL5A3P25940 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC30.39■■■□□ 2.45
COL5A3P25940 RARRES2P6-201ENST00000567333 442 ntBASIC30.39■■■□□ 2.45
COL5A3P25940 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC30.39■■■□□ 2.45
COL5A3P25940 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC30.39■■■□□ 2.45
COL5A3P25940 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
COL5A3P25940 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
COL5A3P25940 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC30.38■■■□□ 2.45
COL5A3P25940 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL5A3P25940 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC30.38■■■□□ 2.45
COL5A3P25940 CLTA-210ENST00000540080 989 ntTSL 2 BASIC30.38■■■□□ 2.45
COL5A3P25940 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL5A3P25940 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
COL5A3P25940 AC139426.1-201ENST00000568218 2529 ntBASIC30.37■■■□□ 2.45
COL5A3P25940 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL5A3P25940 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC30.37■■■□□ 2.45
COL5A3P25940 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
COL5A3P25940 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC30.37■■■□□ 2.45
COL5A3P25940 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL5A3P25940 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL5A3P25940 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL5A3P25940 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC30.36■■■□□ 2.45
COL5A3P25940 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL5A3P25940 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
COL5A3P25940 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
COL5A3P25940 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC30.36■■■□□ 2.45
COL5A3P25940 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
COL5A3P25940 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC30.36■■■□□ 2.45
COL5A3P25940 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC30.36■■■□□ 2.45
COL5A3P25940 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
COL5A3P25940 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
COL5A3P25940 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
COL5A3P25940 GUK1-205ENST00000366722 850 ntTSL 3 BASIC30.35■■■□□ 2.45
COL5A3P25940 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC30.35■■■□□ 2.45
COL5A3P25940 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC30.34■■■□□ 2.45
COL5A3P25940 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
COL5A3P25940 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
COL5A3P25940 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC30.34■■■□□ 2.45
COL5A3P25940 AC133561.4-201ENST00000566112 224 ntBASIC30.34■■■□□ 2.45
COL5A3P25940 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC30.33■■■□□ 2.45
COL5A3P25940 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
COL5A3P25940 CLTA-206ENST00000466396 695 ntTSL 2 BASIC30.33■■■□□ 2.45
COL5A3P25940 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC30.33■■■□□ 2.45
COL5A3P25940 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.32■■■□□ 2.44
COL5A3P25940 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL5A3P25940 ZNRF2P3-201ENST00000424200 374 ntBASIC30.32■■■□□ 2.44
COL5A3P25940 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC30.32■■■□□ 2.44
COL5A3P25940 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
COL5A3P25940 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC30.31■■■□□ 2.44
COL5A3P25940 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
COL5A3P25940 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC30.3■■■□□ 2.44
COL5A3P25940 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
COL5A3P25940 SSSCA1-AS1-201ENST00000567594 614 ntBASIC30.3■■■□□ 2.44
COL5A3P25940 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC30.3■■■□□ 2.44
COL5A3P25940 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
COL5A3P25940 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL5A3P25940 SUDS3P1-201ENST00000505831 966 ntBASIC30.29■■■□□ 2.44
COL5A3P25940 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL5A3P25940 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
COL5A3P25940 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL5A3P25940 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL5A3P25940 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL5A3P25940 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL5A3P25940 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
COL5A3P25940 AC106739.1-201ENST00000617035 715 ntBASIC30.28■■■□□ 2.44
COL5A3P25940 AL031432.3-201ENST00000607698 485 ntBASIC30.27■■■□□ 2.44
COL5A3P25940 AC005837.3-201ENST00000612163 286 ntBASIC30.27■■■□□ 2.44
COL5A3P25940 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC30.26■■■□□ 2.43
COL5A3P25940 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
COL5A3P25940 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.43
COL5A3P25940 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
COL5A3P25940 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL5A3P25940 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC30.25■■■□□ 2.43
COL5A3P25940 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC30.25■■■□□ 2.43
COL5A3P25940 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
COL5A3P25940 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL5A3P25940 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
COL5A3P25940 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC30.25■■■□□ 2.43
COL5A3P25940 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
COL5A3P25940 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC30.24■■■□□ 2.43
COL5A3P25940 SHF-208ENST00000560734 1731 ntTSL 3 BASIC30.24■■■□□ 2.43
COL5A3P25940 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL5A3P25940 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL5A3P25940 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
COL5A3P25940 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL5A3P25940 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC30.23■■■□□ 2.43
COL5A3P25940 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC30.23■■■□□ 2.43
COL5A3P25940 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms