Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
TPM1P09493 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
TPM1P09493 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
TPM1P09493 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
TPM1P09493 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
TPM1P09493 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
TPM1P09493 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
TPM1P09493 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
TPM1P09493 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.83■■□□□ 1.73
TPM1P09493 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC25.83■■□□□ 1.73
TPM1P09493 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.83■■□□□ 1.73
TPM1P09493 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
TPM1P09493 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.83■■□□□ 1.73
TPM1P09493 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC25.83■■□□□ 1.73
TPM1P09493 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
TPM1P09493 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
TPM1P09493 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC25.82■■□□□ 1.72
TPM1P09493 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC25.82■■□□□ 1.72
TPM1P09493 AC079834.2-201ENST00000609776 1949 ntBASIC25.82■■□□□ 1.72
TPM1P09493 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
TPM1P09493 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC25.81■■□□□ 1.72
TPM1P09493 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
TPM1P09493 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC25.81■■□□□ 1.72
TPM1P09493 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC25.81■■□□□ 1.72
TPM1P09493 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
TPM1P09493 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
TPM1P09493 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
TPM1P09493 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
TPM1P09493 ZNRF2P2-203ENST00000454624 420 ntBASIC25.8■■□□□ 1.72
TPM1P09493 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC25.8■■□□□ 1.72
TPM1P09493 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
TPM1P09493 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC25.79■■□□□ 1.72
TPM1P09493 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
TPM1P09493 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC25.79■■□□□ 1.72
TPM1P09493 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
TPM1P09493 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
TPM1P09493 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
TPM1P09493 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
TPM1P09493 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
TPM1P09493 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
TPM1P09493 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC25.78■■□□□ 1.72
TPM1P09493 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
TPM1P09493 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
TPM1P09493 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
TPM1P09493 AC068473.5-201ENST00000616428 2072 ntBASIC25.78■■□□□ 1.72
TPM1P09493 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
TPM1P09493 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
TPM1P09493 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC25.77■■□□□ 1.72
TPM1P09493 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC25.77■■□□□ 1.72
TPM1P09493 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
TPM1P09493 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
TPM1P09493 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
TPM1P09493 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
TPM1P09493 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
TPM1P09493 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
TPM1P09493 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
TPM1P09493 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
TPM1P09493 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.76■■□□□ 1.71
TPM1P09493 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC25.76■■□□□ 1.71
TPM1P09493 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
TPM1P09493 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
TPM1P09493 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
TPM1P09493 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC25.75■■□□□ 1.71
TPM1P09493 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.75■■□□□ 1.71
TPM1P09493 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
TPM1P09493 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TPM1P09493 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TPM1P09493 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
TPM1P09493 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
TPM1P09493 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
TPM1P09493 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TPM1P09493 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
TPM1P09493 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
TPM1P09493 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC25.74■■□□□ 1.71
TPM1P09493 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
TPM1P09493 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
TPM1P09493 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
TPM1P09493 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC25.73■■□□□ 1.71
TPM1P09493 CR559946.2-201ENST00000623684 991 ntBASIC25.73■■□□□ 1.71
TPM1P09493 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
TPM1P09493 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC25.73■■□□□ 1.71
TPM1P09493 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
TPM1P09493 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
TPM1P09493 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
TPM1P09493 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
TPM1P09493 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.72■■□□□ 1.71
TPM1P09493 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.72■■□□□ 1.71
TPM1P09493 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
TPM1P09493 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
TPM1P09493 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
TPM1P09493 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
TPM1P09493 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC25.71■■□□□ 1.71
TPM1P09493 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
TPM1P09493 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC25.71■■□□□ 1.71
TPM1P09493 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC25.71■■□□□ 1.71
TPM1P09493 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
TPM1P09493 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
TPM1P09493 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
TPM1P09493 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
TPM1P09493 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms